HL_8G4S_011

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GCCCACAGCCC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_011 not in the Motif Atlas

Geometric match to HL_4UYK_001

Geometric discrepancy: 0.3856

The information below is about HL_4UYK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_14063.1

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8G4S|1|2|G|404
8G4S|1|2|C|405
8G4S|1|2|C|406
8G4S|1|2|C|407
8G4S|1|2|A|408
8G4S|1|2|C|409
8G4S|1|2|A|410
8G4S|1|2|G|411
8G4S|1|2|C|412
8G4S|1|2|C|413
8G4S|1|2|C|414

Current chains

Chain 2

18S rRNA

Nearby chains

Chain J

Ribosomal protein S9

Chain Y

Ribosomal protein S24