HL_8G4S_015

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CGCGGCGCG

Length

9 nucleotides

Bulged bases

8G4S|1|2|C|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_015 not in the Motif Atlas

Geometric match to HL_4LCK_002

Geometric discrepancy: 0.3073

The information below is about HL_4LCK_002

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_11974.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8G4S|1|2|C|591
8G4S|1|2|G|592
8G4S|1|2|C|593
8G4S|1|2|G|594
8G4S|1|2|G|595
8G4S|1|2|C|596
8G4S|1|2|G|597
8G4S|1|2|C|598
8G4S|1|2|G|599

Current chains

Chain 2

18S rRNA

Nearby chains

Chain H

40S ribosomal protein S7

Chain L

SSU ribosomal protein S17P