HL_8G4S_019

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CGCG

Length

4 nucleotides

Bulged bases

8G4S|1|2|G|804

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_019 not in the Motif Atlas

Geometric match to HL_4L8H_001

Geometric discrepancy: 0.1531

The information below is about HL_4L8H_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8G4S|1|2|C|803
8G4S|1|2|G|804
8G4S|1|2|C|805
8G4S|1|2|G|806

Current chains

Chain 2

18S rRNA

Nearby chains

Chain A

40S ribosomal protein SA

Chain B

40S ribosomal protein S3a