HL_8G4S_025

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CUCCAUUG

Length

8 nucleotides

Bulged bases

8G4S|1|2|U|1053

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_025 not in the Motif Atlas

Homologous match to HL_8C3A_220

Geometric discrepancy: 0.1793

The information below is about HL_8C3A_220

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8G4S|1|2|C|1048
8G4S|1|2|U|1049
8G4S|1|2|C|1050
8G4S|1|2|C|1051
8G4S|1|2|A|1052
8G4S|1|2|U|1053
8G4S|1|2|U|1054
8G4S|1|2|G|1055

Current chains

Chain 2

18S rRNA

Nearby chains

Chain R

Ribosomal protein S17