HL_8G4S_026

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GGCGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_026 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.137

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8G4S|1|2|G|1082
8G4S|1|2|G|1083
8G4S|1|2|C|1084
8G4S|1|2|G|1085
8G4S|1|2|C|1086

Current chains

Chain 2

18S rRNA

Nearby chains

Chain D

Ribosomal protein S3

Chain Q

Ribosomal protein S16

Chain U

Ribosomal protein S20