HL_8G4S_029

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

CUGGAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_029 not in the Motif Atlas

Geometric match to HL_5DH6_002

Geometric discrepancy: 0.1632

The information below is about HL_5DH6_002

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

23

Unit IDs

8G4S|1|2|C|1238
8G4S|1|2|U|1239
8G4S|1|2|G|1240
8G4S|1|2|G|1241
8G4S|1|2|A|1242
8G4S|1|2|A|1243
8G4S|1|2|C|1244
8G4S|1|2|G|1245

Current chains

Chain 2

18S rRNA

Nearby chains

Chain P

Ribosomal protein S15

Chain S

Ribosomal protein S18

Chain d

Ribosomal protein S29A