HL_8G4S_030

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GCCCCCACC

Length

9 nucleotides

Bulged bases

8G4S|1|2|C|1282, 8G4S|1|2|C|1286

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_030 not in the Motif Atlas

Homologous match to HL_8C3A_225

Geometric discrepancy: 0.2381

The information below is about HL_8C3A_225

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01609.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

17

Unit IDs

8G4S|1|2|G|1279
8G4S|1|2|C|1280
8G4S|1|2|C|1281
8G4S|1|2|C|1282
8G4S|1|2|C|1283
8G4S|1|2|C|1284
8G4S|1|2|A|1285
8G4S|1|2|C|1286
8G4S|1|2|C|1287

Current chains

Chain 2

18S rRNA

Nearby chains

Chain T

SSU ribosomal protein S19E (Fragment)

Chain U

Ribosomal protein S20

Chain d

Ribosomal protein S29A