HL_8G4S_035

3D structure

PDB id

8G4S (explore in PDB, NAKB, or RNA 3D Hub)

Description

40S ribosomal subunit of the 80S Giardia intestinalis assemblage A ribosome with Emetine bound in V2 conformation with mRNA and three tRNAs.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.14 Å

Loop

Sequence

GUGAGUUCGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G4S_035 not in the Motif Atlas

Geometric match to HL_1P6V_002

Geometric discrepancy: 0.3334

The information below is about HL_1P6V_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_22031.2

Basepair signature

cWW-cWW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8G4S|1|g|G|50
8G4S|1|g|U|51
8G4S|1|g|G|52
8G4S|1|g|A|53
8G4S|1|g|G|54
8G4S|1|g|U|55
8G4S|1|g|U|56
8G4S|1|g|C|57
8G4S|1|g|G|58
8G4S|1|g|A|59
8G4S|1|g|U|60

Current chains

Chain g

E-site tRNA

Nearby chains