HL_8G5Y_015

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CGAAGAG

Length

7 nucleotides

Bulged bases

8G5Y|1|L5|A|1254, 8G5Y|1|L5|G|1256

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Y_015 not in the Motif Atlas

Geometric match to HL_6N5P_002

Geometric discrepancy: 0.3789

The information below is about HL_6N5P_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37569.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8G5Y|1|L5|C|1252
8G5Y|1|L5|G|1253
8G5Y|1|L5|A|1254
8G5Y|1|L5|A|1255
8G5Y|1|L5|G|1256
8G5Y|1|L5|A|1257
8G5Y|1|L5|G|1258

Current chains

Chain L5

28S rRNA

Nearby chains