HL_8G5Y_054

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

8G5Y|1|L5|C|3761, 8G5Y|1|L5|A|3763

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Y_054 not in the Motif Atlas

Homologous match to HL_5TBW_049

Geometric discrepancy: 0.4185

The information below is about HL_5TBW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84702.1

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8G5Y|1|L5|G|3757
8G5Y|1|L5|PSU|3758
8G5Y|1|L5|A|3759
8G5Y|1|L5|A2M|3760
8G5Y|1|L5|C|3761
8G5Y|1|L5|PSU|3762
8G5Y|1|L5|A|3763
8G5Y|1|L5|PSU|3764
8G5Y|1|L5|G|3765
8G5Y|1|L5|A|3766
8G5Y|1|L5|C|3767

Current chains

Chain L5

28S rRNA

Nearby chains

Chain Pt

Transfer RNA; tRNA

Chain S2

Small subunit ribosomal RNA; SSU rRNA