HL_8G5Y_090

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CUUCGCGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Y_090 not in the Motif Atlas

Geometric match to HL_9DE7_001

Geometric discrepancy: 0.3636

The information below is about HL_9DE7_001

Detailed Annotation

GNRA with extra near cWW

Broad Annotation

GNRA

Motif group

HL_87306.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8G5Y|1|S2|C|196
8G5Y|1|S2|U|197
8G5Y|1|S2|U|198
8G5Y|1|S2|C|199
8G5Y|1|S2|G|200
8G5Y|1|S2|C|201
8G5Y|1|S2|G|202
8G5Y|1|S2|G|203

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SI

40S ribosomal protein S8