HL_8G5Y_092

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CCCCG

Length

5 nucleotides

Bulged bases

8G5Y|1|S2|C|324, 8G5Y|1|S2|C|326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Y_092 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2054

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8G5Y|1|S2|C|323
8G5Y|1|S2|C|324
8G5Y|1|S2|C|325
8G5Y|1|S2|C|326
8G5Y|1|S2|G|327

Current chains

Chain S2

18S rRNA

Nearby chains

Chain LW

60S ribosomal protein L24