HL_8G5Y_114

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

CCCGAG

Length

6 nucleotides

Bulged bases

8G5Y|1|S2|G|1420

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Y_114 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3333

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8G5Y|1|S2|C|1417
8G5Y|1|S2|C|1418
8G5Y|1|S2|C|1419
8G5Y|1|S2|G|1420
8G5Y|1|S2|A|1421
8G5Y|1|S2|G|1422

Current chains

Chain S2

18S rRNA

Nearby chains

Chain ST

40S ribosomal protein S19