HL_8G5Y_123

3D structure

PDB id

8G5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (IC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.29 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Y_123 not in the Motif Atlas

Geometric match to HL_5J7L_212

Geometric discrepancy: 0.1785

The information below is about HL_5J7L_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.5

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8G5Y|1|L5|G|2005
8G5Y|1|L5|U|2006
8G5Y|1|L5|G|2007
8G5Y|1|L5|U|2008
8G5Y|1|L5|A|2009
8G5Y|1|L5|A|2010
8G5Y|1|L5|C|2011
8G5Y|1|L5|A|2012
8G5Y|1|L5|A|2013
8G5Y|1|L5|C|2014

Current chains

Chain L5

28S rRNA

Nearby chains