HL_8G5Z_001

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CAG(H2U)CGG(H2U)AG

Length

10 nucleotides

Bulged bases

8G5Z|1|At|C|17, 8G5Z|1|At|G|18, 8G5Z|1|At|G|19

QA status

Modified nucleotides: H2U

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Z_001 not in the Motif Atlas

Homologous match to HL_6UFM_001

Geometric discrepancy: 0.1731

The information below is about HL_6UFM_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_04642.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8G5Z|1|At|C|13
8G5Z|1|At|A|14
8G5Z|1|At|G|15
8G5Z|1|At|H2U|16
8G5Z|1|At|C|17
8G5Z|1|At|G|18
8G5Z|1|At|G|19
8G5Z|1|At|H2U|20
8G5Z|1|At|A|21
8G5Z|1|At|G|22

Current chains

Chain At

A-site tRNA Phe

Nearby chains

Chain L5

Large subunit ribosomal RNA; LSU rRNA