HL_8G5Z_002
3D structure
- PDB id
- 8G5Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- GA(PSU)UGAA(MIA)A(PSU)C
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G5Z_002 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.3654
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8G5Z|1|At|G|30
8G5Z|1|At|A|31
8G5Z|1|At|PSU|32
8G5Z|1|At|U|33
8G5Z|1|At|G|34
8G5Z|1|At|A|35
8G5Z|1|At|A|36
8G5Z|1|At|MIA|37
8G5Z|1|At|A|38
8G5Z|1|At|PSU|39
8G5Z|1|At|C|40
Current chains
- Chain At
- A-site tRNA Phe
Nearby chains
- Chain L5
- Large subunit ribosomal RNA; LSU rRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- uS19
- Chain SX
- uS12
- Chain Se
- 40S ribosomal protein S30
- Chain Sf
- eS31
- Chain mR
- mRNA
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