HL_8G5Z_088
3D structure
- PDB id
- 8G5Z (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- G(OMC)UCAUAAC
- Length
- 9 nucleotides
- Bulged bases
- 8G5Z|1|Pt|U|34
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G5Z_088 not in the Motif Atlas
- Homologous match to HL_5E81_212
- Geometric discrepancy: 0.0702
- The information below is about HL_5E81_212
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8G5Z|1|Pt|G|32
8G5Z|1|Pt|OMC|33
8G5Z|1|Pt|U|34
8G5Z|1|Pt|C|35
8G5Z|1|Pt|A|36
8G5Z|1|Pt|U|37
8G5Z|1|Pt|A|38
8G5Z|1|Pt|A|39
8G5Z|1|Pt|C|40
Current chains
- Chain Pt
- P-site tRNA fMet
Nearby chains
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SP
- uS19
- Chain SQ
- uS9
- Chain mR
- mRNA
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