HL_8G5Z_092

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GUA(A2M)UUC

Length

7 nucleotides

Bulged bases

8G5Z|1|S2|A|158, 8G5Z|1|S2|U|160, 8G5Z|1|S2|U|161

QA status

Modified nucleotides: A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Z_092 not in the Motif Atlas

Homologous match to HL_4V88_188

Geometric discrepancy: 0.1325

The information below is about HL_4V88_188

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8G5Z|1|S2|G|156
8G5Z|1|S2|U|157
8G5Z|1|S2|A|158
8G5Z|1|S2|A2M|159
8G5Z|1|S2|U|160
8G5Z|1|S2|U|161
8G5Z|1|S2|C|162

Current chains

Chain S2

18S rRNA

Nearby chains

Chain EF

Elongation factor 1-alpha 1

Chain SG

40S ribosomal protein S6

Chain SY

40S ribosomal protein S24