HL_8G5Z_103

3D structure

PDB id

8G5Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CAGCCG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G5Z_103 not in the Motif Atlas

Homologous match to HL_4V88_200

Geometric discrepancy: 0.0934

The information below is about HL_4V88_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8G5Z|1|S2|C|618
8G5Z|1|S2|A|619
8G5Z|1|S2|G|620
8G5Z|1|S2|C|621
8G5Z|1|S2|C|622
8G5Z|1|S2|G|623

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SX

uS12

Chain mR

mRNA