HL_8G60_021

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

CCUCUCCAGUCCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_021 not in the Motif Atlas

Geometric match to HL_8C3A_022

Geometric discrepancy: 0.2853

The information below is about HL_8C3A_022

Detailed Annotation

Externally structured

Broad Annotation

Externally structured

Motif group

HL_96426.1

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

8G60|1|L5|C|1436
8G60|1|L5|C|1437
8G60|1|L5|U|1438
8G60|1|L5|C|1439
8G60|1|L5|U|1440
8G60|1|L5|C|1441
8G60|1|L5|C|1442
8G60|1|L5|A|1443
8G60|1|L5|G|1444
8G60|1|L5|U|1445
8G60|1|L5|C|1446
8G60|1|L5|C|1447
8G60|1|L5|G|1448

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LC

uL4

Chain LF

uL30

Chain LQ

eL18

Chain Lb

eL29