3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
GAAAC
Length
5 nucleotides
Bulged bases
None detected
QA status
Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G60_027 not in the Motif Atlas
Geometric match to HL_5TBW_022
Geometric discrepancy: 0.2334
The information below is about HL_5TBW_022
Detailed Annotation
Externally structured
Broad Annotation
Externally structured
Motif group
HL_96426.1
Basepair signature
cWW-F
Number of instances in this motif group
4

Unit IDs

8G60|1|L5|G|1764
8G60|1|L5|A|1765
8G60|1|L5|A|1766
8G60|1|L5|A|1767
8G60|1|L5|C|1768

Current chains

Chain L5
28S rRNA

Nearby chains

Chain SP
uS19
Chain SS
uS13

Coloring options:


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