3D structure

PDB id
8G60 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.54 Å

Loop

Sequence
UGAGGA
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G60_072 not in the Motif Atlas
Homologous match to HL_8C3A_067
Geometric discrepancy: 0.1631
The information below is about HL_8C3A_067
Detailed Annotation
Ribsomal LSU H95
Broad Annotation
Ribsomal LSU H95
Motif group
HL_65794.1
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8G60|1|L5|U|4646
8G60|1|L5|G|4647
8G60|1|L5|A|4648
8G60|1|L5|G|4649
8G60|1|L5|G|4650
8G60|1|L5|A|4651

Current chains

Chain L5
28S rRNA

Nearby chains

Chain LR
eL19
Chain LU
eL22
Chain Ld
eL31

Coloring options:


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