HL_8G60_094

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_094 not in the Motif Atlas

Homologous match to HL_4V88_194

Geometric discrepancy: 0.1028

The information below is about HL_4V88_194

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50142.3

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

8G60|1|S2|U|416
8G60|1|S2|C|417
8G60|1|S2|A|418
8G60|1|S2|G|419
8G60|1|S2|G|420
8G60|1|S2|G|421

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SC

uS5

Chain SJ

uS4

Chain SL

uS17

Chain SW

uS8

Chain SX

uS12