HL_8G60_121

3D structure

PDB id

8G60 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (CR state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.54 Å

Loop

Sequence

UCUUG(1MA)AAC(A2M)

Length

10 nucleotides

Bulged bases

8G60|1|L5|C|1325

QA status

Modified nucleotides: 1MA, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G60_121 not in the Motif Atlas

Homologous match to HL_8C3A_014

Geometric discrepancy: 0.0661

The information below is about HL_8C3A_014

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8G60|1|L5|U|1317
8G60|1|L5|C|1318
8G60|1|L5|U|1319
8G60|1|L5|U|1320
8G60|1|L5|G|1321
8G60|1|L5|1MA|1322
8G60|1|L5|A|1323
8G60|1|L5|A|1324
8G60|1|L5|C|1325
8G60|1|L5|A2M|1326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

uL3

Chain La

uL15

Chain Le

eL32