HL_8G61_021

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_021 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.0461

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8G61|1|L5|U|1389
8G61|1|L5|G|1390
8G61|1|L5|A|1391
8G61|1|L5|A|1392
8G61|1|L5|G|1393
8G61|1|L5|G|1394

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L13

Chain LQ

60S ribosomal protein L18

Chain La

60S ribosomal protein L27a

Chain Li

60S ribosomal protein L36