8G61 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_8G61_001 | 1/At/11:24 | No text annotation | homologous HL_4V9I_038 HL_68572.1 | |
| HL_8G61_134 | 1/At/31:39 | tRNA anticodon loop | homologous HL_5J8B_118 NA | |
| HL_8G61_003 | 1/At/53:61 | T-loop with 2 stacked bulged bases | homologous HL_3TUP_003 HL_28252.9 | |
| HL_8G61_004 | 1/L5/37:44 | No text annotation | homologous HL_5TBW_001 NA | |
| HL_8G61_005 | 1/L5/68:73 | No text annotation | homologous HL_8C3A_002 NA | |
| HL_8G61_006 | 1/L5/89:95 | No text annotation | homologous HL_5TBW_003 NA | |
| HL_8G61_007 | 1/L5/131:137 | No text annotation | geometric HL_4V9F_011 HL_75660.5 | |
| HL_8G61_008 | 1/L5/204:211 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_005 NA | |
| HL_8G61_009 | 1/L5/222:226 | No text annotation | homologous HL_8C3A_006 NA | |
| HL_8G61_010 | 1/L5/230:238 | T-loop with unstacked turn | homologous HL_5TBW_007 NA | |
| HL_8G61_011 | 1/L5/289:298 | No text annotation | homologous HL_8C3A_008 NA | |
| HL_8G61_012 | 1/L5/314:323 | Pseudoknot geometry | homologous HL_8C3A_009 NA | |
| HL_8G61_013 | 1/L5/368:373 | GNRA | homologous HL_8C3A_010 NA | |
| HL_8G61_123 | 1/L5/393:398 | GNRA | homologous HL_8C3A_011 NA | |
| HL_8G61_017 | 1/L5/1178:1183 | Mini UNCG | geometric HL_4QOZ_001 HL_56334.1 | |
| HL_8G61_018 | 1/L5/1252:1258 | No text annotation | ||
| HL_8G61_124 | 1/L5/1317:1326 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_014 NA | |
| HL_8G61_020 | 1/L5/1364:1373 | No text annotation | ||
| HL_8G61_021 | 1/L5/1389:1394 | GNRA | homologous HL_8C3A_016 NA | |
| HL_8G61_022 | 1/L5/1406:1411 | No text annotation | geometric HL_6D12_002 HL_48417.6 | |
| HL_8G61_023 | 1/L5/1436:1448 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8G61_024 | 1/L5/1480:1484 | No text annotation | ||
| HL_8G61_025 | 1/L5/1561:1566 | GNRA | homologous HL_5TBW_019 NA | |
| HL_8G61_026 | 1/L5/1593:1602 | No text annotation | homologous HL_5TBW_020 NA | |
| HL_8G61_027 | 1/L5/1627:1635 | No text annotation | homologous HL_8C3A_021 NA | |
| HL_8G61_028 | 1/L5/1675:1680 | Externally structured | homologous HL_8C3A_022 NA | |
| HL_8G61_029 | 1/L5/1764:1768 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8G61_030 | 1/L5/1816:1823 | No text annotation | geometric HL_5TBW_024 NA | |
| HL_8G61_031 | 1/L5/1864:1870 | GNRA | geometric HL_5TBW_025 NA | |
| HL_8G61_032 | 1/L5/1886:1893 | No text annotation | homologous HL_8C3A_026 NA | |
| HL_8G61_033 | 1/L5/1978:1988 | No text annotation | homologous HL_8C3A_027 NA | |
| HL_8G61_034 | 1/L5/2006:2013 | GNRA wlth tandem sheared | homologous HL_8C3A_028 NA | |
| HL_8G61_035 | 1/L5/2257:2261 | Mini UNCG | geometric HL_4V9F_021 HL_48778.2 | |
| HL_8G61_036 | 1/L5/2317:2322 | GNRA | homologous HL_8C3A_030 NA | |
| HL_8G61_037 | 1/L5/2376:2384 | T-loop with 2 stacked bulged bases | homologous HL_8C3A_031 NA | |
| HL_8G61_038 | 1/L5/2420:2426 | Pseudoknot geometry with 3' bulge | homologous HL_5TBW_032 NA | |
| HL_8G61_039 | 1/L5/2458:2463 | GNRA variation | homologous HL_5TBW_033 NA | |
| HL_8G61_126 | 1/L5/2485:2493 | No text annotation | ||
| HL_8G61_040 | 1/L5/2486:2491 | No text annotation | geometric HL_4V88_198 NA | |
| HL_8G61_041 | 1/L5/2523:2532 | No text annotation | homologous HL_5TBW_035 NA | |
| HL_8G61_042 | 1/L5/2561:2566 | GNRA | geometric HL_4Y1M_003 HL_37824.8 | |
| HL_8G61_043 | 1/L5/2578:2583 | GNRA | homologous HL_8C3A_036 NA | |
| HL_8G61_127 | 1/L5/2624:2632 | No text annotation | homologous HL_8C3A_037 NA | |
| HL_8G61_045 | 1/L5/2664:2670 | Other HL | geometric HL_4V9F_039 HL_77436.5 | |
| HL_8G61_046 | 1/L5/2705:2710 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_8G61_047 | 1/L5/2738:2742 | No text annotation | homologous HL_8C3A_040 NA | |
| HL_8G61_048 | 1/L5/2792:2799 | No text annotation | homologous HL_5TBW_041 NA | |
| HL_8G61_049 | 1/L5/2810:2816 | GNRA | homologous HL_5TBW_042 NA | |
| HL_8G61_050 | 1/L5/2872:2877 | No text annotation | geometric HL_2Y9H_003 HL_75660.5 | |
| HL_8G61_052 | 1/L5/3614:3618 | No text annotation | homologous HL_8C3A_045 NA | |
| HL_8G61_128 | 1/L5/3639:3649 | No text annotation | homologous HL_8C3A_046 NA | |
| HL_8G61_054 | 1/L5/3668:3674 | GNRA | homologous HL_8C3A_047 NA | |
| HL_8G61_129 | 1/L5/3724:3729 | GNRA | homologous HL_8P9A_159 HL_37824.8 | |
| HL_8G61_056 | 1/L5/3757:3767 | No text annotation | homologous HL_8C3A_049 NA | |
| HL_8G61_057 | 1/L5/3796:3804 | No text annotation | homologous HL_8C3A_050 NA | |
| HL_8G61_058 | 1/L5/3873:3882 | No text annotation | homologous HL_8C3A_051 NA | |
| HL_8G61_060 | 1/L5/4101:4108 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_8G61_061 | 1/L5/4139:4145 | No text annotation | ||
| HL_8G61_062 | 1/L5/4193:4201 | No text annotation | homologous HL_8C3A_055 NA | |
| HL_8G61_063 | 1/L5/4210:4222 | No text annotation | homologous HL_8P9A_166 HL_91939.2 | |
| HL_8G61_064 | 1/L5/4250:4258 | No text annotation | homologous HL_8C3A_057 NA | |
| HL_8G61_065 | 1/L5/4270:4277 | Pseudoknot geometry | homologous HL_8C3A_058 NA | |
| HL_8G61_066 | 1/L5/4301:4309 | No text annotation | homologous HL_8C3A_059 NA | |
| HL_8G61_067 | 1/L5/4321:4326 | GNRA | homologous HL_8C3A_060 NA | |
| HL_8G61_068 | 1/L5/4352:4362 | Pseudoknot geometry | homologous HL_5TBW_060 NA | |
| HL_8G61_069 | 1/L5/4417:4425 | No text annotation | homologous HL_5TBW_061 NA | |
| HL_8G61_070 | 1/L5/4474:4481 | No text annotation | homologous HL_5TBW_062 NA | |
| HL_8G61_071 | 1/L5/4497:4503 | No text annotation | homologous HL_5TBW_063 NA | |
| HL_8G61_072 | 1/L5/4540:4545 | GNRA | homologous HL_8C3A_065 NA | |
| HL_8G61_073 | 1/L5/4603:4608 | GNRA | homologous HL_8C3A_066 NA | |
| HL_8G61_074 | 1/L5/4646:4651 | Ribsomal LSU H95 | homologous HL_8C3A_067 NA | |
| HL_8G61_075 | 1/L5/4688:4702 | No text annotation | homologous HL_8C3A_068 NA | |
| HL_8G61_077 | 1/L5/4907:4914 | No text annotation | geometric HL_8C3A_070 NA | |
| HL_8G61_078 | 1/L5/4975:4983 | No text annotation | homologous HL_8C3A_071 NA | |
| HL_8G61_079 | 1/L5/5021:5028 | No text annotation | ||
| HL_8G61_130 | 1/L7/32:45 | No text annotation | homologous HL_8C3A_228 NA | |
| HL_8G61_080 | 1/L7/36:41 | No text annotation | geometric HL_5TBW_185 NA | |
| HL_8G61_081 | 1/L7/86:91 | GNRA | homologous HL_5TBW_186 NA | |
| HL_8G61_082 | 1/L8/47:56 | No text annotation | geometric HL_7RQB_001 NA | |
| HL_8G61_083 | 1/L8/68:90 | No text annotation | homologous HL_8C3A_075 NA | |
| HL_8G61_084 | 1/L8/107:112 | No text annotation | homologous HL_5TBW_075 NA | |
| HL_8G61_085 | 1/L8/122:128 | No text annotation | ||
| HL_8G61_086 | 1/Pt/13:23 | No text annotation | homologous HL_6PMO_003 NA | |
| HL_8G61_087 | 1/Pt/32:40 | tRNA anticodon loop | homologous HL_6CFJ_107 HL_06059.7 | |
| HL_8G61_088 | 1/Pt/54:62 | T-loop with 2 stacked bulged bases | homologous HL_5UD5_003 HL_28252.9 | |
| HL_8G61_089 | 1/S2/7:17 | No text annotation | homologous HL_4V88_186 NA | |
| HL_8G61_090 | 1/S2/69:80 | No text annotation | geometric HL_361D_002 HL_13963.3 | |
| HL_8G61_091 | 1/S2/156:162 | GNRA related | homologous HL_4V88_188 NA | |
| HL_8G61_092 | 1/S2/196:203 | No text annotation | geometric HL_9DE7_001 HL_77082.1 | |
| HL_8G61_093 | 1/S2/288:295 | T-loop with 1 bulged base | homologous HL_4V88_191 NA | |
| HL_8G61_094 | 1/S2/322:329 | No text annotation | geometric HL_7RQB_011 NA | |
| HL_8G61_095 | 1/S2/377:387 | No text annotation | ||
| HL_8G61_096 | 1/S2/416:421 | No text annotation | geometric HL_1WZ2_007 HL_75660.5 | |
| HL_8G61_097 | 1/S2/441:452 | No text annotation | homologous HL_4V88_195 NA | |
| HL_8G61_131 | 1/S2/462:467 | UNCG | homologous HL_8C3A_202 NA | |
| HL_8G61_099 | 1/S2/498:504 | No text annotation | homologous HL_4V88_197 NA | |
| HL_8G61_100 | 1/S2/539:544 | No text annotation | homologous HL_4V88_198 NA | |
| HL_8G61_101 | 1/S2/569:581 | No text annotation | homologous HL_4V88_199 NA | |
| HL_8G61_102 | 1/S2/618:623 | GNRA variation | homologous HL_4V88_200 NA | |
| HL_8G61_103 | 1/S2/820:828 | No text annotation | homologous HL_4V88_203 NA | |
| HL_8G61_104 | 1/S2/833:841 | No text annotation | geometric HL_7A0S_007 HL_53890.2 | |
| HL_8G61_105 | 1/S2/885:901 | No text annotation | ||
| HL_8G61_132 | 1/S2/957:966 | No text annotation | homologous HL_8C3A_211 NA | |
| HL_8G61_107 | 1/S2/994:999 | GNRA | homologous HL_4V88_207 NA | |
| HL_8G61_108 | 1/S2/1054:1064 | No text annotation | homologous HL_4V88_208 NA | |
| HL_8G61_109 | 1/S2/1113:1120 | No text annotation | geometric HL_8H9D_001 NA | |
| HL_8G61_110 | 1/S2/1141:1146 | GNRA | homologous HL_4V88_210 NA | |
| HL_8G61_111 | 1/S2/1178:1183 | GNRA | geometric HL_4LFB_020 HL_37824.8 | |
| HL_8G61_112 | 1/S2/1245:1254 | No text annotation | homologous HL_8C3A_217 NA | |
| HL_8G61_113 | 1/S2/1295:1304 | Anticodon loop related | homologous HL_4V88_213 NA | |
| HL_8G61_114 | 1/S2/1353:1358 | GNRA | homologous HL_4V88_214 NA | |
| HL_8G61_115 | 1/S2/1366:1373 | No text annotation | homologous HL_4V88_215 NA | |
| HL_8G61_116 | 1/S2/1417:1422 | No text annotation | ||
| HL_8G61_117 | 1/S2/1460:1466 | GNRA related | geometric HL_5J7L_179 HL_04783.2 | |
| HL_8G61_118 | 1/S2/1565:1570 | GNRA | homologous HL_4V88_218 NA | |
| HL_8G61_133 | 1/S2/1614:1625 | No text annotation | homologous HL_8C3A_224 NA | |
| HL_8G61_120 | 1/S2/1658:1666 | No text annotation | homologous HL_4V88_220 NA | |
| HL_8G61_122 | 1/S2/1847:1852 | GNRA variation | homologous HL_4V88_222 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_8G61_002 | No text annotation | ||
| HL_8G61_014 | No text annotation | ||
| HL_8G61_015 | No text annotation | ||
| HL_8G61_016 | Externally structured | ||
| HL_8G61_019 | No text annotation | ||
| HL_8G61_125 | No text annotation | ||
| HL_8G61_044 | No text annotation | ||
| HL_8G61_051 | No text annotation | ||
| HL_8G61_053 | No text annotation | ||
| HL_8G61_055 | No text annotation | ||
| HL_8G61_059 | No text annotation | ||
| HL_8G61_076 | No text annotation | ||
| HL_8G61_098 | No text annotation | ||
| HL_8G61_106 | No text annotation | ||
| HL_8G61_119 | No text annotation | ||
| HL_8G61_121 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_8G61_001 | 1/L5/6:7, 1/L8/149:151 | Single bulged C | homologous IL_8C3A_002 NA | |
| IL_8G61_002 | 1/L5/12:14, 1/L8/143:144 | Single bulged U | homologous IL_8C3A_003 NA | |
| IL_8G61_003 | 1/L5/16:18, 1/L8/139:141 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_8G61_004 | 1/L5/26:27, 1/L5/55:57 | No text annotation | homologous IL_8C3A_004 NA | |
| IL_8G61_005 | 1/L5/30:37, 1/L5/44:52 | 9x8 Sarcin-Ricin; G-bulge | geometric IL_4WF9_008 IL_84694.2 | |
| IL_8G61_006 | 1/L5/81:88, 1/L5/96:102 | No text annotation | homologous IL_8C3A_006 NA | |
| IL_8G61_007 | 1/L5/118:121, 1/L5/152:153 | Stack outside cWW | geometric IL_5J7L_268 IL_56987.1 | |
| IL_8G61_289 | 1/L5/118:122, 1/L5/147:153 | No text annotation | ||
| IL_8G61_008 | 1/L5/121:122, 1/L5/147:152 | No text annotation | homologous IL_8C3A_007 NA | |
| IL_8G61_009 | 1/L5/125:126, 1/L5/142:144 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_8G61_010 | 1/L5/169:173, 1/L5/263:266 | No text annotation | ||
| IL_8G61_012 | 1/L5/179:181, 1/L5/256:257 | Single stack bend | geometric IL_7A0S_054 IL_26793.1 | |
| IL_8G61_290 | 1/L5/181:185, 1/L5/253:256 | No text annotation | ||
| IL_8G61_014 | 1/L5/183:185, 1/L5/253:254 | No text annotation | ||
| IL_8G61_015 | 1/L5/185:189, 1/L5/252:253 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_8G61_016 | 1/L5/195:196, 1/L5/244:246 | Single bulged C | geometric IL_1DQF_001 IL_61258.15 | |
| IL_8G61_017 | 1/L5/199:201, 1/L5/214:215 | Single bulged U | homologous IL_8C3A_013 NA | |
| IL_8G61_018 | 1/L5/339:342, 1/L8/32:33 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_8G61_019 | 1/L5/348:350, 1/L8/25:26 | Single bulged A | homologous IL_8C3A_014 NA | |
| IL_8G61_020 | 1/L5/387:390, 1/L5/401:414 | No text annotation | geometric IL_5TBW_014 NA | |
| IL_8G61_022 | 1/L5/415:421, 1/L8/13:19 | Triple sheared with non-canonical cWW | homologous IL_8C3A_016 NA | |
| IL_8G61_023 | 1/L5/443:446, 1/L5/1300:1304 | No text annotation | ||
| IL_8G61_024 | 1/L5/448:450, 1/L5/1297:1298 | No text annotation | ||
| IL_8G61_025 | 1/L5/459:460, 1/L5/695:697 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_8G61_026 | 1/L5/462:464, 1/L5/691:693 | Isolated non-canonical cWW pair | geometric IL_5ED1_002 IL_87907.2 | |
| IL_8G61_027 | 1/L5/466:472, 1/L5/682:689 | No text annotation | ||
| IL_8G61_028 | 1/L5/482:485, 1/L5/671:672 | Minor groove platform | geometric IL_4LFB_007 IL_33761.2 | |
| IL_8G61_029 | 1/L5/487:488, 1/L5/665:669 | Minor groove platform | geometric IL_5ML7_009 IL_51454.3 | |
| IL_8G61_030 | 1/L5/490:493, 1/L5/661:663 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8G61_291 | 1/L5/490:494, 1/L5/660:663 | No text annotation | ||
| IL_8G61_031 | 1/L5/497:499, 1/L5/655:657 | Isolated non-canonical cWW pair | geometric IL_4P43_004 NA | |
| IL_8G61_033 | 1/L5/508:510, 1/L5/649:650 | Single bulged A | geometric IL_6WPI_001 IL_31462.7 | |
| IL_8G61_034 | 1/L5/512:515, 1/L5/646:647 | Minor groove platform | geometric IL_5ML7_009 IL_51454.3 | |
| IL_8G61_035 | 1/L5/709:710, 1/L5/1286:1288 | Single bulged G | geometric IL_4LFB_036 IL_00225.14 | |
| IL_8G61_036 | 1/L5/723:724, 1/L5/942:945 | Multiple bulged bases | geometric IL_7V9E_001 NA | |
| IL_8G61_037 | 1/L5/727:731, 1/L5/938:939 | No text annotation | ||
| IL_8G61_038 | 1/L5/732:735, 1/L5/928:937 | No text annotation | ||
| IL_8G61_039 | 1/L5/737:739, 1/L5/924:926 | No text annotation | geometric IL_5J7L_341 IL_42626.2 | |
| IL_8G61_040 | 1/L5/740:742, 1/L5/922:923 | No text annotation | ||
| IL_8G61_041 | 1/L5/745:752, 1/L5/911:919 | No text annotation | geometric IL_5TBW_020 NA | |
| IL_8G61_042 | 1/L5/1073:1074, 1/L5/1237:1239 | Single bulged A | geometric IL_4R4V_003 IL_31462.7 | |
| IL_8G61_044 | 1/L5/1082:1084, 1/L5/1213:1217 | Isolated near basepair | geometric IL_7A0S_030 IL_42997.3 | |
| IL_8G61_045 | 1/L5/1086:1087, 1/L5/1209:1211 | Single bulged C | geometric IL_3W3S_001 IL_61258.15 | |
| IL_8G61_046 | 1/L5/1096:1097, 1/L5/1198:1200 | Single bulged G | geometric IL_4C7O_004 IL_00225.14 | |
| IL_8G61_047 | 1/L5/1173:1175, 1/L5/1186:1188 | Isolated cWH basepair | geometric IL_3W3S_003 IL_10167.6 | |
| IL_8G61_048 | 1/L5/1244:1245, 1/L5/1265:1267 | Single bulged G | geometric IL_4V88_442 NA | |
| IL_8G61_049 | 1/L5/1357:1360, 1/L5/1379:1382 | No text annotation | ||
| IL_8G61_292 | 1/L5/1357:1361, 1/L5/1376:1382 | No text annotation | ||
| IL_8G61_050 | 1/L5/1360:1361, 1/L5/1376:1379 | Major groove intercalation | geometric IL_1U9S_003 IL_82107.5 | |
| IL_8G61_051 | 1/L5/1425:1429, 1/L5/1455:1460 | Triple sheared related | geometric IL_4V9F_018 IL_97631.1 | |
| IL_8G61_052 | 1/L5/1431:1434, 1/L5/1450:1453 | Double sheared | geometric IL_4LFB_060 IL_09705.15 | |
| IL_8G61_053 | 1/L5/1467:1468, 1/L5/1496:1498 | Single bulged A | homologous IL_8C3A_026 NA | |
| IL_8G61_054 | 1/L5/1474:1476, 1/L5/1489:1490 | Single stack bend | geometric IL_7A0S_005 IL_90729.1 | |
| IL_8G61_055 | 1/L5/1479:1480, 1/L5/1484:1486 | Single bulged C | geometric IL_5J7L_311 IL_61258.15 | |
| IL_8G61_293 | 1/L5/1520:1522, 1/L5/1655:1657 | Isolated non-canonical cWW pair | homologous IL_8C3A_029 NA | |
| IL_8G61_294 | 1/L5/1522:1526, 1/L5/1648:1655 | No text annotation | homologous IL_8P9A_256 IL_54041.2 | |
| IL_8G61_057 | 1/L5/1545:1546, 1/L5/1612:1614 | Single bulged A | geometric IL_4WF9_022 IL_31462.7 | |
| IL_8G61_058 | 1/L5/1550:1551, 1/L5/1576:1578 | Single bulged G | homologous IL_8C3A_032 NA | |
| IL_8G61_059 | 1/L5/1551:1555, 1/L5/1572:1576 | Triple sheared | geometric IL_4V9F_027 IL_50730.2 | |
| IL_8G61_060 | 1/L5/1586:1589, 1/L5/1605:1607 | Major groove platform with extra cWW | homologous IL_8C3A_034 NA | |
| IL_8G61_061 | 1/L5/1590:1592, 1/L5/1603:1604 | Single bulged U | homologous IL_8C3A_035 NA | |
| IL_8G61_062 | 1/L5/1624:1626, 1/L5/1636:1640 | No text annotation | homologous IL_8C3A_036 NA | |
| IL_8G61_063 | 1/L5/1671:1673, 1/L5/1682:1684 | Isolated non-canonical cWW pair | homologous IL_8C3A_037 NA | |
| IL_8G61_064 | 1/L5/1686:1688, 1/L5/1848:1851 | No text annotation | ||
| IL_8G61_066 | 1/L5/1723:1725, 1/L5/1838:1839 | Single bulged G | homologous IL_8C3A_040 NA | |
| IL_8G61_295 | 1/L5/1732:1737, 1/L5/1792:1797 | No text annotation | ||
| IL_8G61_296 | 1/L5/1737:1738, 1/L5/1790:1792 | Minor groove platform | homologous IL_8C3A_042 NA | |
| IL_8G61_297 | 1/L5/1739:1744, 1/L5/1786:1789 | C-loop with bulged stacked A's | homologous IL_8C3A_043 NA | |
| IL_8G61_298 | 1/L5/1746:1749, 1/L5/1781:1784 | No text annotation | homologous IL_8P9A_269 IL_77658.1 | |
| IL_8G61_299 | 1/L5/1749:1751, 1/L5/1779:1781 | Isolated non-canonical cWW pair | homologous IL_8C3A_045 NA | |
| IL_8G61_070 | 1/L5/1754:1757, 1/L5/1775:1776 | Minor groove platform | geometric IL_3IWN_005 IL_15052.4 | |
| IL_8G61_071 | 1/L5/1761:1763, 1/L5/1769:1771 | Isolated non-canonical cWW pair | geometric IL_4PDQ_004 IL_87907.2 | |
| IL_8G61_072 | 1/L5/1814:1816, 1/L5/1823:1824 | Single bulged G | homologous IL_8C3A_048 NA | |
| IL_8G61_301 | 1/L5/1858:1860, 1/L5/1874:1876 | Isolated non-canonical cWW pair | homologous IL_8P9A_274 IL_87907.2 | |
| IL_8G61_075 | 1/L5/1905:1909, 1/L5/2067:2071 | UAA/GAN | homologous IL_8C3A_051 NA | |
| IL_8G61_076 | 1/L5/1911:1918, 1/L5/2064:2065 | SSU/LSU pseudoknot | homologous IL_8C3A_052 NA | |
| IL_8G61_077 | 1/L5/1918:1920, 1/L5/2063:2064 | Single bulged G | geometric IL_7D7V_002 IL_00225.14 | |
| IL_8G61_078 | 1/L5/1920:1922, 1/L5/2062:2063 | No text annotation | ||
| IL_8G61_079 | 1/L5/1926:1933, 1/L5/2053:2058 | No text annotation | geometric IL_5TBW_051 NA | |
| IL_8G61_080 | 1/L5/1933:1944, 1/L5/2038:2053 | No text annotation | geometric IL_5TBW_052 NA | |
| IL_8G61_081 | 1/L5/1946:1948, 1/L5/2035:2036 | Single bulged U | homologous IL_5TBW_053 NA | |
| IL_8G61_082 | 1/L5/1957:1965, 1/L5/2022:2026 | Kink-turn | homologous IL_5TBW_054 NA | |
| IL_8G61_083 | 1/L5/1973:1977, 1/L5/1989:1993 | No text annotation | homologous IL_8C3A_058 NA | |
| IL_8G61_084 | 1/L5/2001:2005, 1/L5/2014:2016 | Major groove platform with extra cWW | homologous IL_8C3A_059 NA | |
| IL_8G61_085 | 1/L5/2083:2085, 1/L5/2272:2273 | Single bulged C | geometric IL_3DIL_001 IL_61258.15 | |
| IL_8G61_086 | 1/L5/2290:2292, 1/L5/2342:2345 | Isolated cWS basepair | homologous IL_5TBW_057 NA | |
| IL_8G61_087 | 1/L5/2299:2301, 1/L5/2334:2335 | Single bulged A | homologous IL_8C3A_062 NA | |
| IL_8G61_088 | 1/L5/2302:2309, 1/L5/2329:2333 | Kink-turn | homologous IL_8C3A_063 NA | |
| IL_8G61_089 | 1/L5/2312:2314, 1/L5/2325:2326 | Single bulged A | homologous IL_5TBW_060 NA | |
| IL_8G61_303 | 1/L5/2358:2364, 1/L5/3858:3863 | 7x6 Sarcin-Ricin; G-bulge | homologous IL_8P9A_289 IL_26307.2 | |
| IL_8G61_091 | 1/L5/2406:2409, 1/L5/2783:2784 | Major groove platform; stack outside cWW | geometric IL_4V9F_050 IL_50694.7 | |
| IL_8G61_304 | 1/L5/2415:2419, 1/L5/2427:2429 | C-loop | homologous IL_8C3A_482 NA | |
| IL_8G61_093 | 1/L5/2446:2450, 1/L5/2509:2514 | UAA/GAN | homologous IL_8C3A_067 NA | |
| IL_8G61_094 | 1/L5/2477:2479, 1/L5/2499:2500 | Single stack bend | geometric IL_7RQB_058 NA | |
| IL_8G61_095 | 1/L5/2485:2486, 1/L5/2491:2493 | Single stack bend | geometric IL_4V9F_081 IL_26793.1 | |
| IL_8G61_097 | 1/L5/2549:2550, 1/L5/2768:2770 | Single bulged U | geometric IL_2A64_002 IL_89505.4 | |
| IL_8G61_098 | 1/L5/2589:2593, 1/L5/2752:2756 | Triple sheared | homologous IL_5TBW_067 NA | |
| IL_8G61_099 | 1/L5/2613:2614, 1/L5/2724:2726 | Single bulged C | homologous IL_5TBW_069 NA | |
| IL_8G61_100 | 1/L5/2614:2615, 1/L5/2722:2724 | Single stack bend | geometric IL_5TBW_070 NA | |
| IL_8G61_101 | 1/L5/2646:2648, 1/L5/2685:2688 | Isolated tHS basepair with bulges | geometric IL_4V9F_076 IL_85599.2 | |
| IL_8G61_102 | 1/L5/2651:2653, 1/L5/2681:2682 | Single bulged G | geometric IL_3NDB_004 IL_00225.14 | |
| IL_8G61_103 | 1/L5/2656:2662, 1/L5/2672:2678 | Kink-turn | homologous IL_5TBW_073 NA | |
| IL_8G61_104 | 1/L5/2704:2705, 1/L5/2710:2712 | No text annotation | ||
| IL_8G61_305 | 1/L5/2832:2838, 1/L5/3850:3853 | No text annotation | homologous IL_8C3A_080 NA | |
| IL_8G61_306 | 1/L5/2844:2846, 1/L5/3842:3844 | No text annotation | homologous IL_8C3A_081 NA | |
| IL_8G61_307 | 1/L5/2847:2850, 1/L5/3840:3841 | Major groove platform; stack outside cWW | geometric IL_5TBW_076 NA | |
| IL_8G61_308 | 1/L5/2847:2855, 1/L5/3837:3841 | No text annotation | homologous IL_8C3A_484 NA | |
| IL_8G61_109 | 1/L5/2850:2855, 1/L5/3837:3840 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_8G61_110 | 1/L5/2867:2872, 1/L5/2877:2883 | No text annotation | homologous IL_8C3A_084 NA | |
| IL_8G61_111 | 1/L5/2889:2891, 1/L5/3610:3612 | Isolated non-canonical cWW pair | homologous IL_8C3A_085 NA | |
| IL_8G61_112 | 1/L5/2896:2897, 1/L5/3602:3605 | No text annotation | homologous IL_5TBW_080 NA | |
| IL_8G61_115 | 1/L5/3632:3633, 1/L5/3827:3829 | Single bulged A | homologous IL_5TBW_082 NA | |
| IL_8G61_116 | 1/L5/3660:3665, 1/L5/3677:3684 | Kink-turn related | homologous IL_5TBW_083 NA | |
| IL_8G61_118 | 1/L5/3700:3703, 1/L5/3749:3750 | No text annotation | homologous IL_8C3A_089 NA | |
| IL_8G61_119 | 1/L5/3704:3705, 1/L5/3745:3748 | Major groove intercalation | geometric IL_4V9F_067 IL_82107.5 | |
| IL_8G61_121 | 1/L5/3708:3714, 1/L5/3739:3742 | No text annotation | ||
| IL_8G61_309 | 1/L5/3715:3721, 1/L5/3732:3738 | No text annotation | homologous IL_8P9A_316 IL_88116.2 | |
| IL_8G61_125 | 1/L5/3780:3781, 1/L5/3811:3814 | No text annotation | homologous IL_8C3A_094 NA | |
| IL_8G61_310 | 1/L5/3781:3792, 1/L5/3808:3811 | No text annotation | homologous IL_8C3A_095 NA | |
| IL_8G61_128 | 1/L5/3895:3898, 1/L5/4563:4565 | Major groove platform with extra pair | homologous IL_5TBW_091 NA | |
| IL_8G61_130 | 1/L5/3900:3902, 1/L5/4558:4561 | Major groove platform with intercalation | geometric IL_5TBW_092 NA | |
| IL_8G61_131 | 1/L5/3913:3915, 1/L5/4388:4389 | Single bulged U | homologous IL_5TBW_093 NA | |
| IL_8G61_132 | 1/L5/3916:3917, 1/L5/4384:4387 | Minor groove platform | homologous IL_5TBW_094 NA | |
| IL_8G61_134 | 1/L5/3927:3929, 1/L5/4181:4184 | No text annotation | homologous IL_8C3A_100 NA | |
| IL_8G61_136 | 1/L5/3948:3949, 1/L5/4063:4065 | Minor groove platform | geometric IL_7A0S_076 IL_51454.3 | |
| IL_8G61_137 | 1/L5/3950:3952, 1/L5/4060:4062 | Isolated non-canonical cWW pair | geometric IL_6CZR_118 NA | |
| IL_8G61_138 | 1/L5/3955:3966, 1/L5/4055:4057 | Isolated non-canonical cWW pair | geometric IL_4LFB_006 IL_87907.2 | |
| IL_8G61_139 | 1/L5/4082:4088, 1/L5/4161:4164 | No text annotation | homologous IL_8C3A_106 NA | |
| IL_8G61_141 | 1/L5/4191:4192, 1/L5/4202:4204 | Single bulged A | homologous IL_8C3A_107 NA | |
| IL_8G61_142 | 1/L5/4243:4245, 1/L5/4263:4267 | Isolated tHS basepair with bulges | geometric IL_5TBW_099 NA | |
| IL_8G61_312 | 1/L5/4291:4293, 1/L5/4317:4318 | Single bulged A | geometric IL_7A0S_064 IL_31462.7 | |
| IL_8G61_313 | 1/L5/4295:4298, 1/L5/4312:4315 | Tandem non-canonical cWW pairs | homologous IL_8C3A_109 NA | |
| IL_8G61_145 | 1/L5/4347:4350, 1/L5/4364:4365 | Single stack bend | geometric IL_5J7L_032 IL_26793.1 | |
| IL_8G61_314 | 1/L5/4400:4401, 1/L5/4442:4444 | Major groove platform | homologous IL_8P9A_329 IL_48076.6 | |
| IL_8G61_315 | 1/L5/4401:4403, 1/L5/4440:4442 | Isolated non-canonical cWW pair | homologous IL_8P9A_330 IL_87907.2 | |
| IL_8G61_316 | 1/L5/4403:4405, 1/L5/4439:4440 | No text annotation | homologous IL_8P9A_331 IL_07039.3 | |
| IL_8G61_147 | 1/L5/4405:4407, 1/L5/4435:4439 | Major groove minor groove platform with extra cWW | geometric IL_4V9F_084 IL_51387.3 | |
| IL_8G61_149 | 1/L5/4412:4416, 1/L5/4426:4430 | Triple sheared | geometric IL_5TBW_106 NA | |
| IL_8G61_150 | 1/L5/4453:4454, 1/L5/4526:4528 | Major groove platform | homologous IL_8C3A_115 NA | |
| IL_8G61_317 | 1/L5/4456:4458, 1/L5/4520:4524 | No text annotation | homologous IL_8C3A_116 NA | |
| IL_8G61_152 | 1/L5/4458:4459, 1/L5/4517:4520 | No text annotation | homologous IL_8C3A_117 NA | |
| IL_8G61_153 | 1/L5/4466:4468, 1/L5/4489:4491 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_8G61_318 | 1/L5/4466:4470, 1/L5/4485:4491 | No text annotation | ||
| IL_8G61_154 | 1/L5/4468:4470, 1/L5/4485:4489 | No text annotation | ||
| IL_8G61_156 | 1/L5/4495:4497, 1/L5/4503:4505 | Isolated non-canonical cWW pair | geometric IL_5TBW_112 NA | |
| IL_8G61_158 | 1/L5/4537:4538, 1/L5/4547:4549 | Single bulged A | geometric IL_7RQB_101 NA | |
| IL_8G61_161 | 1/L5/4580:4582, 1/L5/4721:4723 | No text annotation | geometric IL_3ICQ_003 NA | |
| IL_8G61_162 | 1/L5/4582:4585, 1/L5/4717:4721 | Double sheared | geometric IL_6E7L_002 IL_10484.1 | |
| IL_8G61_319 | 1/L5/4590:4592, 1/L5/4618:4620 | Isolated non-canonical cWW pair | homologous IL_8P9A_343 IL_28037.2 | |
| IL_8G61_163 | 1/L5/4596:4603, 1/L5/4608:4614 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_5TBW_116 NA | |
| IL_8G61_320 | 1/L5/4624:4629, 1/L5/4669:4673 | No text annotation | ||
| IL_8G61_321 | 1/L5/4632:4637, 1/L5/4662:4666 | UAA/GAN related | homologous IL_8C3A_127 NA | |
| IL_8G61_166 | 1/L5/4638:4640, 1/L5/4659:4661 | Isolated cWH basepair | geometric IL_3R1C_018 IL_10167.6 | |
| IL_8G61_167 | 1/L5/4641:4642, 1/L5/4655:4658 | Multiple bulged bases | homologous IL_5TBW_119 NA | |
| IL_8G61_168 | 1/L5/4680:4685, 1/L5/4705:4710 | UAA/GAN with extra cWW | geometric IL_5J7L_350 IL_49767.8 | |
| IL_8G61_169 | 1/L5/4740:4742, 1/L5/4958:4959 | No text annotation | ||
| IL_8G61_170 | 1/L5/4743:4746, 1/L5/4954:4957 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_8G61_171 | 1/L5/4749:4751, 1/L5/4948:4951 | No text annotation | ||
| IL_8G61_172 | 1/L5/4756:4765, 1/L5/4869:4877 | No text annotation | ||
| IL_8G61_173 | 1/L5/4769:4771, 1/L5/4863:4865 | Isolated non-canonical cWW pair | geometric IL_1YZ9_001 NA | |
| IL_8G61_174 | 1/L5/4885:4889, 1/L5/4930:4934 | Triple non-canonical cWW pairs | geometric IL_8S95_002 IL_49751.4 | |
| IL_8G61_175 | 1/L5/4891:4896, 1/L5/4924:4928 | No text annotation | ||
| IL_8G61_176 | 1/L5/4899:4901, 1/L5/4920:4921 | Single bulged C | geometric IL_1S03_006 IL_61258.15 | |
| IL_8G61_177 | 1/L5/4992:4994, 1/L5/5057:5059 | Isolated non-canonical cWW pair | geometric IL_3D0U_006 IL_87907.2 | |
| IL_8G61_178 | 1/L5/4996:4997, 1/L5/5053:5055 | Single bulged C | geometric IL_7RQB_108 NA | |
| IL_8G61_179 | 1/L5/5000:5002, 1/L5/5045:5050 | Isolated non-canonical cWW pair | homologous IL_5TBW_132 NA | |
| IL_8G61_180 | 1/L5/5003:5009, 1/L5/5039:5044 | No text annotation | ||
| IL_8G61_182 | 1/L5/5012:5014, 1/L5/5035:5036 | Single bulged U | homologous IL_8C3A_140 NA | |
| IL_8G61_183 | 1/L5/5014:5017, 1/L5/5032:5035 | Double sheared | geometric IL_4V9F_100 IL_09705.15 | |
| IL_8G61_184 | 1/L7/15:16, 1/L7/62:64 | Single bulged A | homologous IL_5TBW_372 NA | |
| IL_8G61_185 | 1/L7/21:27, 1/L7/52:57 | Minor groove platform related | homologous IL_5TBW_373 NA | |
| IL_8G61_186 | 1/L7/28:29, 1/L7/48:51 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_357 IL_68140.4 | |
| IL_8G61_187 | 1/L7/32:36, 1/L7/41:45 | Symmetric double minor groove platform | homologous IL_7RQB_114 NA | |
| IL_8G61_188 | 1/L7/71:78, 1/L7/98:104 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_5TBW_377 NA | |
| IL_8G61_189 | 1/L7/79:81, 1/L7/95:97 | No text annotation | geometric IL_7RQB_015 NA | |
| IL_8G61_190 | 1/L7/82:85, 1/L7/92:94 | Isolated non-canonical cWW pair | homologous IL_5TBW_378 NA | |
| IL_8G61_191 | 1/L8/64:66, 1/L8/92:95 | Isolated non-canonical cWW pair | homologous IL_5TBW_145 NA | |
| IL_8G61_322 | 1/S2/23:25, 1/S2/649:651 | Isolated non-canonical cWW pair | geometric IL_5UNE_006 IL_87907.2 | |
| IL_8G61_323 | 1/S2/34:36, 1/S2/519:521 | Isolated non-canonical cWW pair | homologous IL_8C3A_393 NA | |
| IL_8G61_195 | 1/S2/37:40, 1/S2/514:518 | Double sheared | geometric IL_4WF9_016 IL_09705.15 | |
| IL_8G61_196 | 1/S2/41:47, 1/S2/479:481 | No text annotation | homologous IL_4V88_387 NA | |
| IL_8G61_197 | 1/S2/49:51, 1/S2/476:477 | Minor groove platform | homologous IL_4V88_388 NA | |
| IL_8G61_198 | 1/S2/57:62, 1/S2/86:88 | No text annotation | geometric IL_4V88_389 NA | |
| IL_8G61_324 | 1/S2/63:68, 1/S2/81:85 | No text annotation | homologous IL_8P9A_379 IL_21667.1 | |
| IL_8G61_201 | 1/S2/108:110, 1/S2/351:353 | Stack and bulge | geometric IL_2O3X_001 IL_31737.3 | |
| IL_8G61_202 | 1/S2/110:112, 1/S2/349:351 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_87907.2 | |
| IL_8G61_203 | 1/S2/112:115, 1/S2/348:349 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_8G61_325 | 1/S2/116:121, 1/S2/343:347 | No text annotation | homologous IL_8P9A_382 IL_29223.1 | |
| IL_8G61_205 | 1/S2/123:124, 1/S2/339:341 | Minor groove platform | geometric IL_4V88_388 NA | |
| IL_8G61_326 | 1/S2/145:151, 1/S2/167:174 | No text annotation | homologous IL_8C3A_402 NA | |
| IL_8G61_345 | 1/S2/152:154, 1/S2/164:166 | No text annotation | homologous IL_8P9A_384 IL_44465.1 | |
| IL_8G61_209 | 1/S2/188:192, 1/S2/207:211 | Triple sheared | geometric IL_4WFL_001 IL_17948.2 | |
| IL_8G61_210 | 1/S2/216:219, 1/S2/302:309 | No text annotation | ||
| IL_8G61_212 | 1/S2/312:314, 1/S2/336:337 | Single bulged A | homologous IL_4V88_399 NA | |
| IL_8G61_213 | 1/S2/317:319, 1/S2/332:333 | Single stack bend | geometric IL_5TBW_009 NA | |
| IL_8G61_214 | 1/S2/359:364, 1/S2/396:403 | Kink-turn with non-sequential stacking | homologous IL_4V88_402 NA | |
| IL_8G61_215 | 1/S2/366:371, 1/S2/393:394 | No text annotation | geometric IL_5Y58_001 IL_59877.1 | |
| IL_8G61_216 | 1/S2/411:413, 1/S2/424:429 | No text annotation | homologous IL_4V88_404 NA | |
| IL_8G61_217 | 1/S2/437:439, 1/S2/454:456 | Isolated cWH basepair | homologous IL_4V88_405 NA | |
| IL_8G61_328 | 1/S2/459:461, 1/S2/468:470 | Isolated non-canonical cWW pair | homologous IL_8C3A_414 NA | |
| IL_8G61_329 | 1/S2/487:489, 1/S2/511:512 | Single bulged U | homologous IL_8P9A_396 IL_89505.4 | |
| IL_8G61_330 | 1/S2/491:495, 1/S2/508:509 | C-loop | homologous IL_8C3A_416 NA | |
| IL_8G61_219 | 1/S2/495:496, 1/S2/506:508 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_8G61_220 | 1/S2/529:530, 1/S2/554:556 | Single bulged A | geometric IL_4V88_452 NA | |
| IL_8G61_221 | 1/S2/535:537, 1/S2/546:549 | No text annotation | geometric IL_4N0T_004 IL_99358.1 | |
| IL_8G61_222 | 1/S2/563:565, 1/S2/585:592 | Isolated tHS basepair with bulges | geometric IL_7RQB_082 NA | |
| IL_8G61_223 | 1/S2/566:569, 1/S2/581:584 | Tandem non-canonical cWW pairs | geometric IL_5C5W_001 IL_77658.1 | |
| IL_8G61_224 | 1/S2/599:606, 1/S2/636:637 | SSU/LSU pseudoknot | geometric IL_4V88_413 NA | |
| IL_8G61_225 | 1/S2/606:608, 1/S2/635:636 | Single bulged U | geometric IL_4V88_407 NA | |
| IL_8G61_227 | 1/S2/611:617, 1/S2/624:632 | Kink-turn related | homologous IL_4V88_415 NA | |
| IL_8G61_228 | 1/S2/663:665, 1/S2/1162:1164 | Isolated non-canonical cWW pair | geometric IL_1Y27_001 IL_87907.2 | |
| IL_8G61_229 | 1/S2/665:671, 1/S2/1161:1162 | No text annotation | homologous IL_4V88_416 NA | |
| IL_8G61_230 | 1/S2/673:675, 1/S2/1030:1032 | Isolated non-canonical cWW pair | homologous IL_4V88_417 NA | |
| IL_8G61_231 | 1/S2/676:680, 1/S2/1025:1029 | tSH-tHW-tHS | homologous IL_4V88_418 NA | |
| IL_8G61_346 | 1/S2/802:803, 1/S2/860:863 | No text annotation | homologous IL_8P9A_412 IL_68140.4 | |
| IL_8G61_234 | 1/S2/805:807, 1/S2/856:858 | Isolated non-canonical cWW pair | homologous IL_4V88_424 NA | |
| IL_8G61_333 | 1/S2/807:815, 1/S2/849:856 | No text annotation | homologous IL_8C3A_503 NA | |
| IL_8G61_236 | 1/S2/874:876, 1/S2/910:912 | Isolated non-canonical cWW pair | geometric IL_6IA2_004 IL_87907.2 | |
| IL_8G61_237 | 1/S2/877:879, 1/S2/907:909 | Isolated non-canonical cWW pair | geometric IL_5TBW_042 NA | |
| IL_8G61_238 | 1/S2/922:923, 1/S2/1019:1022 | Major groove platform; stack outside cWW | homologous IL_4V88_428 NA | |
| IL_8G61_334 | 1/S2/925:926, 1/S2/1015:1017 | Single bulged U | geometric IL_8C3A_056 NA | |
| IL_8G61_335 | 1/S2/928:931, 1/S2/1010:1013 | No text annotation | homologous IL_8P9A_419 IL_85033.2 | |
| IL_8G61_241 | 1/S2/931:935, 1/S2/1007:1010 | Tandem non-canonical cWW pairs | homologous IL_4V88_431 NA | |
| IL_8G61_242 | 1/S2/942:945, 1/S2/981:984 | Tandem non-canonical cWW pairs | homologous IL_4V88_432 NA | |
| IL_8G61_243 | 1/S2/952:956, 1/S2/967:974 | Kink-turn | geometric IL_4V88_434 NA | |
| IL_8G61_244 | 1/S2/1042:1047, 1/S2/1071:1073 | Other IL | geometric IL_4V88_435 NA | |
| IL_8G61_245 | 1/S2/1047:1051, 1/S2/1067:1071 | tSH-tHW-tHS | homologous IL_4V88_436 NA | |
| IL_8G61_246 | 1/S2/1091:1093, 1/S2/1152:1158 | No text annotation | homologous IL_4V88_437 NA | |
| IL_8G61_247 | 1/S2/1098:1101, 1/S2/1131:1134 | Tandem non-canonical cWW pairs | geometric IL_4V88_438 NA | |
| IL_8G61_248 | 1/S2/1101:1103, 1/S2/1129:1131 | Isolated non-canonical cWW pair | geometric IL_4V9F_105 IL_87907.2 | |
| IL_8G61_249 | 1/S2/1108:1110, 1/S2/1123:1124 | Minor groove platform | geometric IL_4V88_412 NA | |
| IL_8G61_250 | 1/S2/1168:1175, 1/S2/1186:1191 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4V88_440 NA | |
| IL_8G61_252 | 1/S2/1203:1204, 1/S2/1694:1696 | Single bulged A | homologous IL_4V88_441 NA | |
| IL_8G61_336 | 1/S2/1206:1208, 1/S2/1691:1692 | Single bulged G | homologous IL_8C3A_448 NA | |
| IL_8G61_254 | 1/S2/1214:1217, 1/S2/1681:1685 | C-loop | homologous IL_4V88_443 NA | |
| IL_8G61_337 | 1/S2/1230:1232, 1/S2/1526:1528 | Isolated non-canonical cWW pair | homologous IL_8P9A_432 IL_87907.2 | |
| IL_8G61_257 | 1/S2/1235:1236, 1/S2/1521:1523 | Minor groove platform | homologous IL_4V88_445 NA | |
| IL_8G61_258 | 1/S2/1270:1272, 1/S2/1510:1512 | Isolated non-canonical cWW pair | homologous IL_4V88_446 NA | |
| IL_8G61_347 | 1/S2/1282:1290, 1/S2/1309:1315 | No text annotation | ||
| IL_8G61_260 | 1/S2/1291:1293, 1/S2/1306:1308 | No text annotation | homologous IL_4V88_448 NA | |
| IL_8G61_339 | 1/S2/1325:1327, 1/S2/1502:1503 | Single bulged U | homologous IL_8C3A_455 NA | |
| IL_8G61_262 | 1/S2/1329:1333, 1/S2/1498:1500 | Isolated cWS basepair | geometric IL_4V88_450 NA | |
| IL_8G61_340 | 1/S2/1329:1335, 1/S2/1492:1500 | No text annotation | homologous IL_8P9A_439 IL_86012.1 | |
| IL_8G61_263 | 1/S2/1333:1335, 1/S2/1492:1498 | Minor groove platform with extra cWW | homologous IL_4V88_451 NA | |
| IL_8G61_341 | 1/S2/1337:1338, 1/S2/1488:1490 | Single bulged A | homologous IL_8C3A_458 NA | |
| IL_8G61_342 | 1/S2/1347:1349, 1/S2/1380:1382 | Isolated cWH basepair | homologous IL_8P9A_442 IL_10167.6 | |
| IL_8G61_266 | 1/S2/1363:1365, 1/S2/1374:1375 | Minor groove platform | homologous IL_4V88_454 NA | |
| IL_8G61_343 | 1/S2/1395:1399, 1/S2/1447:1450 | Tandem non-canonical cWW pairs | geometric IL_6JDV_002 IL_85033.2 | |
| IL_8G61_268 | 1/S2/1402:1405, 1/S2/1441:1444 | Minor groove platform | homologous IL_4V88_456 NA | |
| IL_8G61_269 | 1/S2/1408:1409, 1/S2/1432:1438 | Multiple bulged bases | geometric IL_4V88_392 NA | |
| IL_8G61_270 | 1/S2/1412:1413, 1/S2/1427:1429 | Single bulged G | geometric IL_5J7L_019 IL_00225.14 | |
| IL_8G61_271 | 1/S2/1416:1417, 1/S2/1422:1424 | Single bulged C | geometric IL_7KGA_004 IL_61258.15 | |
| IL_8G61_272 | 1/S2/1537:1539, 1/S2/1594:1596 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_87907.2 | |
| IL_8G61_344 | 1/S2/1541:1550, 1/S2/1582:1592 | No text annotation | ||
| IL_8G61_273 | 1/S2/1550:1558, 1/S2/1577:1582 | 180 degree turn | geometric IL_5J7L_055 IL_11344.2 | |
| IL_8G61_274 | 1/S2/1560:1562, 1/S2/1573:1575 | Isolated non-canonical cWW pair | geometric IL_4V88_470 NA | |
| IL_8G61_275 | 1/S2/1604:1610, 1/S2/1629:1635 | No text annotation | homologous IL_8C3A_469 NA | |
| IL_8G61_276 | 1/S2/1700:1702, 1/S2/1833:1836 | No text annotation | homologous IL_4V88_463 NA | |
| IL_8G61_277 | 1/S2/1702:1705, 1/S2/1829:1833 | No text annotation | homologous IL_8P9A_453 IL_65718.4 | |
| IL_8G61_278 | 1/S2/1706:1708, 1/S2/1826:1828 | Isolated non-canonical cWW pair | homologous IL_4V88_465 NA | |
| IL_8G61_279 | 1/S2/1708:1711, 1/S2/1822:1826 | No text annotation | homologous IL_8CRE_469 IL_11399.2 | |
| IL_8G61_280 | 1/S2/1714:1716, 1/S2/1817:1819 | Isolated non-canonical cWW pair | homologous IL_4V88_467 NA | |
| IL_8G61_281 | 1/S2/1717:1720, 1/S2/1813:1816 | Double sheared | homologous IL_4V88_468 NA | |
| IL_8G61_282 | 1/S2/1720:1722, 1/S2/1812:1813 | Single bulged U | geometric IL_4V88_469 NA | |
| IL_8G61_283 | 1/S2/1729:1731, 1/S2/1803:1805 | Isolated non-canonical cWW pair | homologous IL_4V88_470 NA | |
| IL_8G61_284 | 1/S2/1733:1736, 1/S2/1798:1801 | Double sheared | homologous IL_4V88_471 NA | |
| IL_8G61_285 | 1/S2/1739:1741, 1/S2/1793:1795 | Isolated non-canonical cWW pair | geometric IL_4E48_002 IL_87907.2 | |
| IL_8G61_286 | 1/S2/1742:1746, 1/S2/1788:1792 | Triple sheared | homologous IL_4V88_474 NA | |
| IL_8G61_287 | 1/S2/1750:1752, 1/S2/1780:1784 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_8G61_011 | Isolated non-canonical cWW pair | ||
| IL_8G61_013 | Isolated non-canonical cWW pair | ||
| IL_8G61_021 | Isolated non-canonical cWW pair | ||
| IL_8G61_032 | Single bulged C | ||
| IL_8G61_043 | Decoding loop related | ||
| IL_8G61_056 | No text annotation | ||
| IL_8G61_065 | No text annotation | ||
| IL_8G61_067 | No text annotation | ||
| IL_8G61_068 | No text annotation | ||
| IL_8G61_069 | No text annotation | ||
| IL_8G61_300 | No text annotation | ||
| IL_8G61_073 | Tandem non-canonical cWW pairs | ||
| IL_8G61_302 | No text annotation | ||
| IL_8G61_074 | Tandem non-canonical cWW pairs | ||
| IL_8G61_090 | Tandem non-canonical cWW pairs | ||
| IL_8G61_092 | No text annotation | ||
| IL_8G61_096 | Self complementary | ||
| IL_8G61_105 | No text annotation | ||
| IL_8G61_106 | Stack and bulge | ||
| IL_8G61_107 | No text annotation | ||
| IL_8G61_108 | Major groove platform with extra pair | ||
| IL_8G61_113 | Isolated non-canonical cWW pair | ||
| IL_8G61_114 | Isolated non-canonical cWW pair | ||
| IL_8G61_117 | Stack and bulge | ||
| IL_8G61_120 | No text annotation | ||
| IL_8G61_122 | No text annotation | ||
| IL_8G61_123 | Not an internal loop | ||
| IL_8G61_124 | Not an internal loop | ||
| IL_8G61_126 | No text annotation | ||
| IL_8G61_127 | Stack and bulge | ||
| IL_8G61_129 | Isolated non-canonical cWW pair | ||
| IL_8G61_133 | Isolated non-canonical cWW pair | ||
| IL_8G61_135 | No text annotation | ||
| IL_8G61_311 | No text annotation | ||
| IL_8G61_140 | Isolated non-canonical cWW pair | ||
| IL_8G61_143 | Decoding loop related | ||
| IL_8G61_144 | No text annotation | ||
| IL_8G61_146 | No text annotation | ||
| IL_8G61_148 | Not an internal loop | ||
| IL_8G61_151 | No text annotation | ||
| IL_8G61_155 | Not an internal loop | ||
| IL_8G61_157 | No text annotation | ||
| IL_8G61_159 | Isolated non-canonical cWW pair | ||
| IL_8G61_160 | Not an internal loop | ||
| IL_8G61_164 | No text annotation | ||
| IL_8G61_165 | Triple sheared related | ||
| IL_8G61_181 | Stack and bulge | ||
| IL_8G61_192 | No text annotation | ||
| IL_8G61_193 | No text annotation | ||
| IL_8G61_194 | Isolated non-canonical cWW pair | ||
| IL_8G61_199 | No text annotation | ||
| IL_8G61_200 | Isolated non-canonical cWW pair | ||
| IL_8G61_204 | No text annotation | ||
| IL_8G61_206 | No text annotation | ||
| IL_8G61_207 | No text annotation | ||
| IL_8G61_208 | Tandem non-canonical cWW pairs | ||
| IL_8G61_327 | No text annotation | ||
| IL_8G61_211 | No text annotation | ||
| IL_8G61_218 | No text annotation | ||
| IL_8G61_331 | Triple non-canonical cWW pairs | ||
| IL_8G61_226 | Not an internal loop | ||
| IL_8G61_232 | Stack and bulge | ||
| IL_8G61_233 | No text annotation | ||
| IL_8G61_332 | No text annotation | ||
| IL_8G61_235 | No text annotation | ||
| IL_8G61_239 | Isolated non-canonical cWW pair | ||
| IL_8G61_240 | No text annotation | ||
| IL_8G61_251 | Stack and bulge | ||
| IL_8G61_253 | Intercalated cWW | ||
| IL_8G61_255 | Isolated cWS basepair | ||
| IL_8G61_256 | Tandem non-canonical cWW pairs | ||
| IL_8G61_259 | No text annotation | ||
| IL_8G61_338 | No text annotation | ||
| IL_8G61_261 | Isolated non-canonical cWW pair | ||
| IL_8G61_264 | Isolated non-canonical cWW pair | ||
| IL_8G61_265 | No text annotation | ||
| IL_8G61_267 | No text annotation | ||
| IL_8G61_288 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_8G61_001 | 1/L5/112:116, 1/L5/155:160, 1/L5/275:278 | No text annotation | ||
| J3_8G61_024 | 1/L5/196:199, 1/L5/215:228, 1/L5/240:244 | No text annotation | ||
| J3_8G61_025 | 1/L5/351:367, 1/L5/374:379, 1/L8/21:24 | No text annotation | homologous J3_8P9A_045 J3_30040.2 | |
| J3_8G61_026 | 1/L5/380:387, 1/L5/414:415, 1/L8/19:20 | No text annotation | geometric J3_5TBW_002 NA | |
| J3_8G61_027 | 1/L5/380:390, 1/L5/401:415, 1/L8/19:20 | No text annotation | homologous J3_8P9A_047 J3_92134.2 | |
| J3_8G61_028 | 1/L5/451:455, 1/L5/701:705, 1/L5/1292:1296 | No text annotation | ||
| J3_8G61_029 | 1/L5/712:713, 1/L5/955:976, 1/L5/1278:1284 | No text annotation | ||
| J3_8G61_002 | 1/L5/1531:1537, 1/L5/1622:1624, 1/L5/1640:1643 | No text annotation | homologous J3_8C3A_003 NA | |
| J3_8G61_003 | 1/L5/1546:1548, 1/L5/1580:1584, 1/L5/1609:1612 | No text annotation | homologous J3_8C3A_004 NA | |
| J3_8G61_030 | 1/L5/1726:1727, 1/L5/1802:1806, 1/L5/1832:1837 | No text annotation | homologous J3_8P9A_051 J3_09667.1 | |
| J3_8G61_004 | 1/L5/1969:1972, 1/L5/1994:2001, 1/L5/2016:2018 | No text annotation | ||
| J3_8G61_005 | 1/L5/2393:2399, 1/L5/2805:2807, 1/L5/2819:2822 | No text annotation | homologous J3_8C3A_006 NA | |
| J3_8G61_006 | 1/L5/2402:2405, 1/L5/2785:2791, 1/L5/2800:2802 | No text annotation | homologous J3_5TBW_009 NA | |
| J3_8G61_031 | 1/L5/2440:2445, 1/L5/2515:2519, 1/L5/2536:2537 | No text annotation | homologous J3_8P9A_055 J3_31965.2 | |
| J3_8G61_032 | 1/L5/2451:2456, 1/L5/2465:2476, 1/L5/2501:2508 | No text annotation | homologous J3_8C3A_053 NA | |
| J3_8G61_007 | 1/L5/2551:2555, 1/L5/2572:2575, 1/L5/2757:2767 | No text annotation | ||
| J3_8G61_033 | 1/L5/2575:2576, 1/L5/2585:2589, 1/L5/2756:2757 | No text annotation | homologous J3_8C3A_054 NA | |
| J3_8G61_034 | 1/L5/2598:2602, 1/L5/2737:2738, 1/L5/2742:2747 | No text annotation | homologous J3_8P9A_058 J3_12393.2 | |
| J3_8G61_008 | 1/L5/3937:3939, 1/L5/4074:4078, 1/L5/4168:4173 | No text annotation | geometric J3_8VTW_006 NA | |
| J3_8G61_035 | 1/L5/4091:4097, 1/L5/4112:4129, 1/L5/4155:4158 | No text annotation | ||
| J3_8G61_036 | 1/L5/4228:4230, 1/L5/4331:4342, 1/L5/4370:4375 | No text annotation | homologous J3_8C3A_056 NA | |
| J3_8G61_009 | 1/L5/4241:4243, 1/L5/4267:4269, 1/L5/4278:4283 | No text annotation | homologous J3_5TBW_013 NA | |
| J3_8G61_037 | 1/L5/4463:4466, 1/L5/4491:4493, 1/L5/4507:4513 | No text annotation | homologous J3_8C3A_011 NA | |
| J3_8G61_038 | 1/L5/4751:4754, 1/L5/4879:4883, 1/L5/4936:4948 | No text annotation | ||
| J3_8G61_011 | 1/L5/4970:4975, 1/L5/4983:4991, 1/L5/5060:5063 | No text annotation | ||
| J3_8G61_039 | 1/L7/9:14, 1/L7/65:66, 1/L7/109:110 | No text annotation | homologous J3_8P9A_066 J3_12003.2 | |
| J3_8G61_040 | 1/L8/44:45, 1/L8/58:64, 1/L8/95:99 | No text annotation | homologous J3_8C3A_060 NA | |
| J3_8G61_041 | 1/S2/40:41, 1/S2/481:487, 1/S2/512:514 | No text annotation | geometric J3_8C3A_082 NA | |
| J3_8G61_042 | 1/S2/40:47, 1/S2/479:487, 1/S2/512:514 | No text annotation | homologous J3_8P9A_069 J3_46317.4 | |
| J3_8G61_043 | 1/S2/682:684, 1/S2/918:922, 1/S2/1022:1023 | No text annotation | geometric J3_4V88_080 NA | |
| J3_8G61_044 | 1/S2/682:684, 1/S2/918:923, 1/S2/1019:1023 | No text annotation | homologous J3_8P9A_072 J3_17385.4 | |
| J3_8G61_014 | 1/S2/816:819, 1/S2/829:831, 1/S2/843:848 | No text annotation | homologous J3_4V88_032 NA | |
| J3_8G61_045 | 1/S2/938:941, 1/S2/985:993, 1/S2/1000:1004 | No text annotation | homologous J3_8P9A_074 J3_76375.1 | |
| J3_8G61_046 | 1/S2/1094:1096, 1/S2/1136:1140, 1/S2/1147:1151 | No text annotation | ||
| J3_8G61_017 | 1/S2/1218:1221, 1/S2/1645:1651, 1/S2/1673:1680 | No text annotation | homologous J3_4V88_035 NA | |
| J3_8G61_018 | 1/S2/1225:1228, 1/S2/1530:1532, 1/S2/1638:1641 | No text annotation | homologous J3_4V88_036 NA | |
| J3_8G61_047 | 1/S2/1237:1244, 1/S2/1255:1266, 1/S2/1516:1520 | No text annotation | homologous J3_8C3A_040 NA | |
| J3_8G61_020 | 1/S2/1272:1277, 1/S2/1320:1324, 1/S2/1504:1510 | No text annotation | homologous J3_8C3A_041 NA | |
| J3_8G61_021 | 1/S2/1340:1345, 1/S2/1384:1389, 1/S2/1481:1486 | No text annotation | homologous J3_8P9A_080 J3_99563.1 | |
| J3_8G61_048 | 1/S2/1350:1351, 1/S2/1360:1363, 1/S2/1375:1379 | No text annotation | homologous J3_8P9A_081 J3_76043.3 | |
| J3_8G61_049 | 1/S2/1391:1395, 1/S2/1450:1456, 1/S2/1470:1479 | No text annotation | ||
| J3_8G61_023 | 1/S2/1532:1536, 1/S2/1597:1604, 1/S2/1635:1638 | No text annotation | homologous J3_8C3A_044 NA | |
| J4_8G61_001 | 1/At/7:10, 1/At/25:27, 1/At/43:49, 1/At/65:66 | tRNA junction | homologous J4_1IL2_001 J4_70449.29 | |
| J4_8G61_002 | 1/L5/111:112, 1/L5/278:283, 1/L5/304:310, 1/L5/327:330 | No text annotation | homologous J4_8P9A_012 J4_45801.6 | |
| J4_8G61_003 | 1/L5/196:199, 1/L5/215:222, 1/L5/226:228, 1/L5/240:244 | No text annotation | ||
| J4_8G61_004 | 1/L5/981:983, 1/L5/1070:1072, 1/L5/1240:1243, 1/L5/1268:1273 | No text annotation | ||
| J4_8G61_005 | 1/L5/2365:2371, 1/L5/2389:2391, 1/L5/2824:2829, 1/L5/3856:3857 | No text annotation | ||
| J4_8G61_006 | 1/L5/2406:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2784 | No text annotation | ||
| J4_8G61_007 | 1/L5/2409:2410, 1/L5/2434:2439, 1/L5/2538:2539, 1/L5/2777:2783 | No text annotation | ||
| J4_8G61_008 | 1/L5/2618:2619, 1/L5/2637:2642, 1/L5/2692:2698, 1/L5/2718:2719 | No text annotation | ||
| J4_8G61_009 | 1/L5/3634:3638, 1/L5/3650:3654, 1/L5/3690:3694, 1/L5/3821:3826 | No text annotation | homologous J4_8C3A_006 NA | |
| J4_8G61_010 | 1/L5/3696:3698, 1/L5/3752:3753, 1/L5/3771:3780, 1/L5/3814:3819 | No text annotation | homologous J4_8C3A_007 NA | |
| J4_8G61_011 | 1/L5/4231:4235, 1/L5/4289:4291, 1/L5/4318:4319, 1/L5/4328:4330 | No text annotation | ||
| J4_8G61_012 | 1/L5/4231:4235, 1/L5/4289:4293, 1/L5/4317:4319, 1/L5/4328:4330 | No text annotation | homologous J4_8P9A_019 J4_04930.6 | |
| J4_8G61_013 | 1/L5/4587:4590, 1/L5/4620:4621, 1/L5/4676:4678, 1/L5/4712:4715 | No text annotation | ||
| J4_8G61_014 | 1/Pt/7:10, 1/Pt/26:28, 1/Pt/44:50, 1/Pt/66:67 | No text annotation | homologous J4_6CFJ_015 J4_70449.29 | |
| J4_8G61_015 | 1/S2/98:106, 1/S2/355:357, 1/S2/405:409, 1/S2/431:432 | No text annotation | homologous J4_8P9A_021 J4_15241.1 | |
| J4_8G61_016 | 1/S2/671:673, 1/S2/1032:1037, 1/S2/1078:1089, 1/S2/1160:1161 | No text annotation | homologous J4_8P9A_022 J4_61885.6 | |
| J5_8G61_001 | 1/L5/19:21, 1/L8/35:42, 1/L8/101:106, 1/L8/113:114, 1/L8/136:138 | No text annotation | homologous J5_8P9A_010 J5_01737.2 | |
| J5_8G61_002 | 1/L5/1335:1340, 1/L5/1516:1519, 1/L5/1658:1661, 1/L5/2288:2290, 1/L5/2345:2351 | No text annotation | homologous J5_8P9A_011 J5_63811.1 | |
| J5_8G61_003 | 1/L5/2855:2863, 1/L5/2887:2888, 1/L5/3613:3614, 1/L5/3618:3626, 1/L5/3835:3837 | No text annotation | homologous J5_8C3A_004 NA | |
| J5_8G61_004 | 1/L5/3903:3910, 1/L5/4392:4400, 1/L5/4444:4453, 1/L5/4528:4534, 1/L5/4552:4557 | No text annotation | ||
| J5_8G61_005 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4228, 1/L5/4375:4381 | No text annotation | homologous J5_8C3A_006 NA | |
| J5_8G61_006 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:563, 1/S2/592:595, 1/S2/641:644 | No text annotation | homologous J5_8C3A_018 NA | |
| J5_8G61_007 | 1/S2/30:34, 1/S2/521:527, 1/S2/558:565, 1/S2/585:595, 1/S2/641:644 | No text annotation | ||
| J5_8G61_008 | 1/S2/53:56, 1/S2/89:96, 1/S2/434:436, 1/S2/457:459, 1/S2/470:474 | No text annotation | homologous J5_8C3A_020 NA | |
| J5_8G61_009 | 1/S2/125:129, 1/S2/183:185, 1/S2/214:215, 1/S2/310:312, 1/S2/337:338 | No text annotation | ||
| J6_8G61_001 | 1/L5/21:26, 1/L5/57:67, 1/L5/74:78, 1/L5/105:109, 1/L5/332:339, 1/L8/33:35 | No text annotation | ||
| J6_8G61_002 | 1/L5/1352:1355, 1/L5/1384:1388, 1/L5/1395:1399, 1/L5/1418:1421, 1/L5/1464:1466, 1/L5/1499:1504 | No text annotation | ||
| J6_8G61_003 | 1/L5/3920:3923, 1/L5/4188:4191, 1/L5/4204:4205, 1/L5/4227:4230, 1/L5/4331:4342, 1/L5/4370:4381 | No text annotation | ||
| J7_8G61_001 | 1/L5/1666:1671, 1/L5/1684:1685, 1/L5/1852:1855, 1/L5/1879:1884, 1/L5/1895:1899, 1/L5/2077:2078, 1/L5/2278:2283 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_8G61_010 | No text annotation | ||
| J3_8G61_012 | No text annotation | ||
| J3_8G61_013 | No text annotation | ||
| J3_8G61_015 | No text annotation | ||
| J3_8G61_016 | No text annotation | ||
| J3_8G61_019 | No text annotation | ||
| J3_8G61_022 | No text annotation |
Coloring options: