HL_8G61_025

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_025 not in the Motif Atlas

Homologous match to HL_5TBW_019

Geometric discrepancy: 0.0868

The information below is about HL_5TBW_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8G61|1|L5|G|1561
8G61|1|L5|G|1562
8G61|1|L5|A|1563
8G61|1|L5|A|1564
8G61|1|L5|A|1565
8G61|1|L5|C|1566

Current chains

Chain L5

28S rRNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain SL

40S ribosomal protein S11

Chain SN

40S ribosomal protein S13