HL_8G61_065
3D structure
- PDB id
- 8G61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.94 Å
Loop
- Sequence
- CAGAAGGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G61_065 not in the Motif Atlas
- Homologous match to HL_8C3A_058
- Geometric discrepancy: 0.1084
- The information below is about HL_8C3A_058
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
8G61|1|L5|C|4270
8G61|1|L5|A|4271
8G61|1|L5|G|4272
8G61|1|L5|A|4273
8G61|1|L5|A|4274
8G61|1|L5|G|4275
8G61|1|L5|G|4276
8G61|1|L5|G|4277
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain LI
- 60S ribosomal protein L10
- Chain LT
- 60S ribosomal protein L21
- Chain Lo
- 60S ribosomal protein L36a
- Chain Pt
- Transfer RNA; tRNA
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