3D structure

PDB id
8G61 (explore in PDB, NAKB, or RNA 3D Hub)
Description
mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.94 Å

Loop

Sequence
CGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G61_072 not in the Motif Atlas
Homologous match to HL_8C3A_065
Geometric discrepancy: 0.0934
The information below is about HL_8C3A_065
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.2
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

8G61|1|L5|C|4540
8G61|1|L5|G|4541
8G61|1|L5|U|4542
8G61|1|L5|G|4543
8G61|1|L5|A|4544
8G61|1|L5|G|4545

Current chains

Chain L5
28S rRNA

Nearby chains

Chain 5A
eIF5A1
Chain LA
uL2
Chain Pt
Transfer RNA; tRNA

Coloring options:


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