HL_8G61_088

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

GU(PSU)CAAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_088 not in the Motif Atlas

Homologous match to HL_5UD5_003

Geometric discrepancy: 0.2692

The information below is about HL_5UD5_003

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.2

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

135

Unit IDs

8G61|1|Pt|G|54
8G61|1|Pt|U|55
8G61|1|Pt|PSU|56
8G61|1|Pt|C|57
8G61|1|Pt|A|58
8G61|1|Pt|A|59
8G61|1|Pt|A|60
8G61|1|Pt|U|61
8G61|1|Pt|C|62

Current chains

Chain Pt

RNA (77-MER)

Nearby chains

Chain 5A

eIF5A1

Chain L5

Large subunit ribosomal RNA; LSU rRNA

Chain LJ

60S ribosomal protein L11

Chain Lo

60S ribosomal protein L36a