HL_8G61_103

3D structure

PDB id

8G61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (AC state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.94 Å

Loop

Sequence

UG(PSU)UCAAAG

Length

9 nucleotides

Bulged bases

8G61|1|S2|G|821

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G61_103 not in the Motif Atlas

Homologous match to HL_4V88_203

Geometric discrepancy: 0.3804

The information below is about HL_4V88_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8G61|1|S2|U|820
8G61|1|S2|G|821
8G61|1|S2|PSU|822
8G61|1|S2|U|823
8G61|1|S2|C|824
8G61|1|S2|A|825
8G61|1|S2|A|826
8G61|1|S2|A|827
8G61|1|S2|G|828

Current chains

Chain S2

18S rRNA

Nearby chains

Chain SE

40S ribosomal protein S4, X isoform

Chain SJ

40S ribosomal protein S9

Chain SY

40S ribosomal protein S24