HL_8G6J_054

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

G(PSU)UUAAUUAAAAC

Length

13 nucleotides

Bulged bases

8G6J|1|L5|A|3642, 8G6J|1|L5|A|3643, 8G6J|1|L5|U|3644, 8G6J|1|L5|A|3648

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6J_054 not in the Motif Atlas

Geometric match to HL_7A0S_045

Geometric discrepancy: 0.2866

The information below is about HL_7A0S_045

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50951.1

Basepair signature

cWW-F-F-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

8G6J|1|L5|G|3638
8G6J|1|L5|PSU|3639
8G6J|1|L5|U|3640
8G6J|1|L5|U|3641
8G6J|1|L5|A|3642
8G6J|1|L5|A|3643
8G6J|1|L5|U|3644
8G6J|1|L5|U|3645
8G6J|1|L5|A|3646
8G6J|1|L5|A|3647
8G6J|1|L5|A|3648
8G6J|1|L5|A|3649
8G6J|1|L5|C|3650

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

uL2

Chain Lj

60S ribosomal protein L37