HL_8G6J_057
3D structure
- PDB id
- 8G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- G(PSU)A(A2M)C(PSU)A(PSU)GAC
- Length
- 11 nucleotides
- Bulged bases
- 8G6J|1|L5|C|3761, 8G6J|1|L5|A|3763
- QA status
- Modified nucleotides: PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8G6J_057 not in the Motif Atlas
- Homologous match to HL_5TBW_049
- Geometric discrepancy: 0.4619
- The information below is about HL_5TBW_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_84702.1
- Basepair signature
- cWW-F-F-tHW-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8G6J|1|L5|G|3757
8G6J|1|L5|PSU|3758
8G6J|1|L5|A|3759
8G6J|1|L5|A2M|3760
8G6J|1|L5|C|3761
8G6J|1|L5|PSU|3762
8G6J|1|L5|A|3763
8G6J|1|L5|PSU|3764
8G6J|1|L5|G|3765
8G6J|1|L5|A|3766
8G6J|1|L5|C|3767
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain At
- Transfer RNA; tRNA
- Chain Pt
- Transfer RNA; tRNA
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Se
- FAU ubiquitin-like and ribosomal protein S30
- Chain mR
- mRNA
Coloring options: