HL_8G6J_064

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UCAAACGGUA(6MZ)CG

Length

13 nucleotides

Bulged bases

8G6J|1|L5|A|4214, 8G6J|1|L5|C|4221

QA status

Modified nucleotides: 6MZ

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6J_064 not in the Motif Atlas

Homologous match to HL_8P9A_166

Geometric discrepancy: 0.1087

The information below is about HL_8P9A_166

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

8G6J|1|L5|U|4210
8G6J|1|L5|C|4211
8G6J|1|L5|A|4212
8G6J|1|L5|A|4213
8G6J|1|L5|A|4214
8G6J|1|L5|C|4215
8G6J|1|L5|G|4216
8G6J|1|L5|G|4217
8G6J|1|L5|U|4218
8G6J|1|L5|A|4219
8G6J|1|L5|6MZ|4220
8G6J|1|L5|C|4221
8G6J|1|L5|G|4222

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29