HL_8G6J_070

3D structure

PDB id

8G6J (explore in PDB, NAKB, or RNA 3D Hub)

Description

mRNA decoding in human is kinetically and structurally distinct from bacteria (GA state 2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

8G6J|1|L5|U|4419, 8G6J|1|L5|A|4422

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6J_070 not in the Motif Atlas

Homologous match to HL_5TBW_061

Geometric discrepancy: 0.3916

The information below is about HL_5TBW_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82661.1

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8G6J|1|L5|C|4417
8G6J|1|L5|G|4418
8G6J|1|L5|U|4419
8G6J|1|L5|PSU|4420
8G6J|1|L5|C|4421
8G6J|1|L5|A|4422
8G6J|1|L5|PSU|4423
8G6J|1|L5|A|4424
8G6J|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain At

Transfer RNA; tRNA

Chain LI

60S ribosomal protein L10

Chain Lm

eL40