3D structure

PDB id
8G6W (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli 70S ribosome complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site ortho-aminobenzoic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.02 Å

Loop

Sequence
GGAAAC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G6W_003 not in the Motif Atlas
Homologous match to HL_5J7L_003
Geometric discrepancy: 0.2026
The information below is about HL_5J7L_003
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8G6W|1|A|G|158
8G6W|1|A|G|159
8G6W|1|A|A|160
8G6W|1|A|A|161
8G6W|1|A|A|162
8G6W|1|A|C|163

Current chains

Chain A
16S rRNA

Nearby chains

Chain T
30S ribosomal protein S20
Chain o
50S ribosomal protein L19

Coloring options:


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