HL_8G6X_004

3D structure

PDB id

8G6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.31 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

8G6X|1|Z|C|17, 8G6X|1|Z|U|17|||A, 8G6X|1|Z|G|18

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6X_004 not in the Motif Atlas

Homologous match to HL_4V90_032

Geometric discrepancy: 0.2654

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

8G6X|1|Z|C|13
8G6X|1|Z|A|14
8G6X|1|Z|G|15
8G6X|1|Z|C|16
8G6X|1|Z|C|17
8G6X|1|Z|U|17|||A
8G6X|1|Z|G|18
8G6X|1|Z|G|19
8G6X|1|Z|U|20
8G6X|1|Z|A|21
8G6X|1|Z|G|22

Current chains

Chain Z

P-site tRNA fMet

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA

Chain f

50S ribosomal protein L5