3D structure

PDB id
8G6X (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.31 Å

Loop

Sequence
UGUGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G6X_034 not in the Motif Atlas
Homologous match to HL_5J7L_164
Geometric discrepancy: 0.1268
The information below is about HL_5J7L_164
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.8
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
352

Unit IDs

8G6X|1|a|U|1222
8G6X|1|a|G|1223
8G6X|1|a|U|1224
8G6X|1|a|G|1225
8G6X|1|a|A|1226
8G6X|1|a|G|1227

Current chains

Chain a
23S rRNA

Nearby chains

Chain k
50S ribosomal protein L15
Chain p
50S ribosomal protein L20
Chain q
Ribosomal protein L21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.0956 s