HL_8G6X_052

3D structure

PDB id

8G6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.31 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

8G6X|1|a|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6X_052 not in the Motif Atlas

Homologous match to HL_5J7L_182

Geometric discrepancy: 0.0552

The information below is about HL_5J7L_182

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8G6X|1|a|G|1949
8G6X|1|a|G|1950
8G6X|1|a|U|1951
8G6X|1|a|A|1952
8G6X|1|a|A|1953
8G6X|1|a|G|1954
8G6X|1|a|U|1955
8G6X|1|a|U|1956
8G6X|1|a|C|1957

Current chains

Chain a

23S rRNA

Nearby chains

Chain j

50S ribosomal protein L14