HL_8G6X_058

3D structure

PDB id

8G6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site meta-aminobenzoic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.31 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6X_058 not in the Motif Atlas

Homologous match to HL_5J7L_188

Geometric discrepancy: 0.1236

The information below is about HL_5J7L_188

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11805.4

Basepair signature

cWW-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8G6X|1|a|G|2303
8G6X|1|a|G|2304
8G6X|1|a|U|2305
8G6X|1|a|C|2306
8G6X|1|a|G|2307
8G6X|1|a|G|2308
8G6X|1|a|A|2309
8G6X|1|a|C|2310
8G6X|1|a|A|2311
8G6X|1|a|U|2312
8G6X|1|a|C|2313

Current chains

Chain a

23S rRNA

Nearby chains

Chain f

50S ribosomal protein L5