HL_8G6Y_001

3D structure

PDB id

8G6Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe

Experimental method

ELECTRON MICROSCOPY

Resolution

2.09 Å

Loop

Sequence

CAGGGUAG

Length

8 nucleotides

Bulged bases

8G6Y|1|Y|G|18, 8G6Y|1|Y|G|19, 8G6Y|1|Y|U|20

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G6Y_001 not in the Motif Atlas

Homologous match to HL_6PMO_003

Geometric discrepancy: 0.2141

The information below is about HL_6PMO_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8G6Y|1|Y|C|13
8G6Y|1|Y|A|14
8G6Y|1|Y|G|15
8G6Y|1|Y|G|18
8G6Y|1|Y|G|19
8G6Y|1|Y|U|20
8G6Y|1|Y|A|21
8G6Y|1|Y|G|22

Current chains

Chain Y

A-site tRNA Phe

Nearby chains

Chain a

Large subunit ribosomal RNA; LSU rRNA