3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
G(PSU)AAC(3TD)A(PSU)AAC
Length
11 nucleotides
Bulged bases
8G6Y|1|a|A|1913, 8G6Y|1|a|C|1914, 8G6Y|1|a|A|1916
QA status
Modified nucleotides: PSU, 3TD

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G6Y_051 not in the Motif Atlas
Homologous match to HL_5J7L_181
Geometric discrepancy: 0.0792
The information below is about HL_5J7L_181
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_25847.2
Basepair signature
cWW-F-cSH-tHW-F-F-F
Number of instances in this motif group
3

Unit IDs

8G6Y|1|a|G|1910
8G6Y|1|a|PSU|1911
8G6Y|1|a|A|1912
8G6Y|1|a|A|1913
8G6Y|1|a|C|1914
8G6Y|1|a|3TD|1915
8G6Y|1|a|A|1916
8G6Y|1|a|PSU|1917
8G6Y|1|a|A|1918
8G6Y|1|a|A|1919
8G6Y|1|a|C|1920

Current chains

Chain a
23S rRNA

Nearby chains

Chain X
mRNA
Chain Y
Transfer RNA; tRNA
Chain Z
Transfer RNA; tRNA

Coloring options:


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