3D structure

PDB id
8G6Y (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of WT E.coli ribosome 50S subunit with complexed with mRNA, P-site fMet-NH-tRNAfMet and A-site 3-aminopyridine-4-carboxylic acid charged NH-tRNAPhe
Experimental method
ELECTRON MICROSCOPY
Resolution
2.09 Å

Loop

Sequence
(PSU)GCUAACG
Length
8 nucleotides
Bulged bases
8G6Y|1|a|U|958, 8G6Y|1|a|C|961
QA status
Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8G6Y_074 not in the Motif Atlas
Homologous match to HL_5J7L_211
Geometric discrepancy: 0.0607
The information below is about HL_5J7L_211
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

8G6Y|1|a|PSU|955
8G6Y|1|a|G|956
8G6Y|1|a|C|957
8G6Y|1|a|U|958
8G6Y|1|a|A|959
8G6Y|1|a|A|960
8G6Y|1|a|C|961
8G6Y|1|a|G|962

Current chains

Chain a
23S rRNA

Nearby chains

Chain b
5S ribosomal RNA; 5S rRNA
Chain l
50S ribosomal protein L16

Coloring options:


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