HL_8G7Q_106

3D structure

PDB id

8G7Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with EF-Tu and Ile-tRNAIle(LAU) bound to the near-cognate AUG codon (Structure II)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

8G7Q|1|x|C|16, 8G7Q|1|x|G|18, 8G7Q|1|x|G|19, 8G7Q|1|x|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G7Q_106 not in the Motif Atlas

Homologous match to HL_4TUE_033

Geometric discrepancy: 0.1974

The information below is about HL_4TUE_033

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_93616.2

Basepair signature

cWW-cWS-F-F-F-F

Number of instances in this motif group

8

Unit IDs

8G7Q|1|x|C|13
8G7Q|1|x|A|14
8G7Q|1|x|G|15
8G7Q|1|x|C|16
8G7Q|1|x|C|17
8G7Q|1|x|U|17|||A
8G7Q|1|x|G|18
8G7Q|1|x|G|19
8G7Q|1|x|U|20
8G7Q|1|x|A|21
8G7Q|1|x|G|22

Current chains

Chain x

P-site initiator tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain F

50S ribosomal protein L5