HL_8G7R_083

3D structure

PDB id

8G7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCAGCC(G7M)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: G7M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G7R_083 not in the Motif Atlas

Geometric match to HL_2ZZN_004

Geometric discrepancy: 0.1985

The information below is about HL_2ZZN_004

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_64640.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8G7R|1|a|G|521
8G7R|1|a|C|522
8G7R|1|a|A|523
8G7R|1|a|G|524
8G7R|1|a|C|525
8G7R|1|a|C|526
8G7R|1|a|G7M|527
8G7R|1|a|C|528

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain l

30S ribosomal protein S12

Chain v

M-I mRNA

Chain w

Transfer RNA; tRNA