HL_8G7R_111

3D structure

PDB id

8G7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with A-site tRNAIle(LAU) bound to the cognate AUA codon (Structure III)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

8G7R|1|A|U|958, 8G7R|1|A|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G7R_111 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.2319

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8G7R|1|A|PSU|955
8G7R|1|A|G|956
8G7R|1|A|C|957
8G7R|1|A|U|958
8G7R|1|A|A|959
8G7R|1|A|A|960
8G7R|1|A|C|961
8G7R|1|A|G|962

Current chains

Chain A

23S Ribosomal RNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain O

50S ribosomal protein L16