HL_8G7S_078

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G7S_078 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1204

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8G7S|1|a|A|320
8G7S|1|a|A|321
8G7S|1|a|C|322
8G7S|1|a|U|323
8G7S|1|a|G|324
8G7S|1|a|A|325
8G7S|1|a|G|326
8G7S|1|a|A|327
8G7S|1|a|C|328
8G7S|1|a|A|329
8G7S|1|a|C|330
8G7S|1|a|G|331
8G7S|1|a|G|332
8G7S|1|a|U|333

Current chains

Chain a

16S Ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20