HL_8G7S_107

3D structure

PDB id

8G7S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Escherichia coli 70S ribosome in complex with P-site tRNAIle(LAU) bound to the cognate AUA codon (Structure IV)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

G(5MU)(PSU)CAAGUCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 5MU, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8G7S_107 not in the Motif Atlas

Geometric match to HL_6U8D_003

Geometric discrepancy: 0.2413

The information below is about HL_6U8D_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32346.3

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

8G7S|1|y|G|53
8G7S|1|y|5MU|54
8G7S|1|y|PSU|55
8G7S|1|y|C|56
8G7S|1|y|A|57
8G7S|1|y|A|58
8G7S|1|y|G|59
8G7S|1|y|U|60
8G7S|1|y|C|61
8G7S|1|y|C|62

Current chains

Chain y

Isoleucine tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA