HL_8GHU_003

3D structure

PDB id

8GHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Methyltransferase RmtC bound to the 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGGAAACG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8GHU_003 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.3772

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_45359.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8GHU|1|a|U|157
8GHU|1|a|G|158
8GHU|1|a|G|159
8GHU|1|a|A|160
8GHU|1|a|A|161
8GHU|1|a|A|162
8GHU|1|a|C|163
8GHU|1|a|G|164

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20