RNA 3D Hub //

8GHU Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8GHU_0011/a/12:22No text annotation
homologous
HL_5J7L_001
NA
HL_8GHU_0021/a/67:102No text annotation
HL_8GHU_0031/a/157:164GNRA with extra cWW
geometric
HL_7A0S_056
HL_45359.1
HL_8GHU_0041/a/185:192GNRA with extra cWW
geometric
HL_7A0S_056
HL_45359.1
HL_8GHU_0391/a/203:214No text annotation
HL_8GHU_0401/a/259:267GNRA related
homologous
HL_5J7L_006
NA
HL_8GHU_0071/a/296:301GNRA
homologous
HL_5J7L_007
NA
HL_8GHU_0411/a/318:335No text annotation
HL_8GHU_0081/a/319:334No text annotation
HL_8GHU_0091/a/342:347UNCG
homologous
HL_6CZR_080
NA
HL_8GHU_0101/a/379:384GNRA
homologous
HL_6CZR_081
NA
HL_8GHU_0111/a/409:433No text annotation
HL_8GHU_0121/a/462:470GNRA wlth extra near cWW
homologous
HL_5J7L_012
NA
HL_8GHU_0131/a/522:527GNRA variation
geometric
HL_1MFQ_001
HL_34789.1
HL_8GHU_0421/a/617:623GNRA-like with tWH
homologous
HL_4LFB_014
HL_92337.1
HL_8GHU_0351/a/669:737No text annotation
HL_8GHU_0151/a/679:711No text annotation
HL_8GHU_0361/a/779:803No text annotation
HL_8GHU_0161/a/785:797No text annotation
HL_8GHU_0181/a/862:867GNRA
homologous
HL_6CZR_090
NA
HL_8GHU_0191/a/897:902GNRA
homologous
HL_4LFB_020
HL_34789.1
HL_8GHU_0211/a/1076:1081GNRA
homologous
HL_5J7L_023
NA
HL_8GHU_0221/a/1089:1096T-loop related
homologous
HL_4LFB_025
HL_63894.1
HL_8GHU_0261/a/1449:1454UNCG
homologous
HL_5J7L_030
NA
HL_8GHU_0271/a/1515:1520GNRA
homologous
HL_5J7L_031
NA

Problematic loops

#loop idProblemSequence
HL_8GHU_028No text annotation
HL_8GHU_029No text annotation
HL_8GHU_005No text annotation
HL_8GHU_006No text annotation
HL_8GHU_030No text annotation
HL_8GHU_031No text annotation
HL_8GHU_032No text annotation
HL_8GHU_033No text annotation
HL_8GHU_034No text annotation
HL_8GHU_014No text annotation
HL_8GHU_037No text annotation
HL_8GHU_043No text annotation
HL_8GHU_017No text annotation
HL_8GHU_020No text annotation
HL_8GHU_023No text annotation
HL_8GHU_038No text annotation
HL_8GHU_024GNRA
HL_8GHU_025No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8GHU_0011/a/30:32,
1/a/552:553		Single bulged G
homologous
IL_4LFB_001
IL_28408.1
IL_8GHU_0021/a/44:45,
1/a/396:398		Single bulged A
homologous
IL_5J7L_002
NA
IL_8GHU_0031/a/54:56,
1/a/356:357		Minor groove platform
homologous
IL_4LFB_004
IL_34520.1
IL_8GHU_0041/a/63:66,
1/a/103:104		Multiple bulged bases
homologous
IL_6CZR_117
NA
IL_8GHU_0351/a/127:131,
1/a/231:234		Tandem non-canonical cWW pairs
geometric
IL_1GID_008
NA
IL_8GHU_0051/a/128:131,
1/a/231:233		Isolated non-canonical cWW pair
homologous
IL_5J7L_009
NA
IL_8GHU_0061/a/132:136,
1/a/227:230		Minor groove platform related
homologous
IL_6CZR_120
NA
IL_8GHU_0071/a/144:147,
1/a/175:178		Tandem non-canonical cWW pairs
geometric
IL_6CZR_168
NA
IL_8GHU_0491/a/144:155,
1/a/166:178		No text annotation
IL_8GHU_0081/a/147:153,
1/a/168:175		tWH-tWH-tHW-tHW
homologous
IL_6CZR_121
NA
IL_8GHU_0091/a/203:207,
1/a/212:214		No text annotation
homologous
IL_5J7L_013
NA
IL_8GHU_0101/a/242:247,
1/a/277:284		Kink-turn with non-sequential stacking
homologous
IL_6CZR_123
NA
IL_8GHU_0501/a/249:253,
1/a/273:275		No text annotation
IL_8GHU_0511/a/292:293,
1/a/304:308		C-loop
homologous
IL_4LFB_013
IL_06671.1
IL_8GHU_0131/a/370:375,
1/a/389:391		No text annotation
IL_8GHU_0521/a/371:376,
1/a/387:390		No text annotation
IL_8GHU_0141/a/375:376,
1/a/387:389		Single bulged G
homologous
IL_5J7L_019
NA
IL_8GHU_0151/a/440:443,
1/a/491:497		No text annotation
IL_8GHU_0161/a/446:450,
1/a/483:488		tSH-tHW-tWW
homologous
IL_5J7L_022
NA
IL_8GHU_0531/a/446:455,
1/a/477:488		No text annotation
IL_8GHU_0171/a/450:456,
1/a/476:483		No text annotation
homologous
IL_6CZR_131
NA
IL_8GHU_0181/a/504:511,
1/a/540:541		SSU/LSU pseudoknot
homologous
IL_4LFB_020
IL_11411.1
IL_8GHU_0191/a/515:521,
1/a/528:536		No text annotation
geometric
IL_8CRE_423
IL_52042.1
IL_8GHU_0541/a/580:584,
1/a/757:761		tSH-tHW-tHS
homologous
IL_5J7L_027
NA
IL_8GHU_0211/a/589:596,
1/a/644:650		No text annotation
IL_8GHU_0221/a/597:599,
1/a/639:643		8-nt loop receptor
geometric
IL_6CK5_002
IL_44025.1
IL_8GHU_0231/a/605:612,
1/a/628:633		No text annotation
homologous
IL_5J7L_030
NA
IL_8GHU_0241/a/672:678,
1/a/712:734		No text annotation
IL_8GHU_0431/a/774:778,
1/a/804:805		Left turn
homologous
IL_6CZR_144
NA
IL_8GHU_0261/a/779:783,
1/a/799:803		tSH-tHW-tHS
homologous
IL_6CZR_145
NA
IL_8GHU_0551/a/826:833,
1/a/853:874		No text annotation
IL_8GHU_0271/a/887:894,
1/a/905:910		8x6 Sarcin-Ricin with inserted Y; G-bulge
homologous
IL_4LFB_034
IL_84044.1
IL_8GHU_0451/a/922:923,
1/a/1393:1395		No text annotation
IL_8GHU_0571/a/1416:1422,
1/a/1478:1484		No text annotation
IL_8GHU_0311/a/1430:1435,
1/a/1466:1470		Triple sheared related
homologous
IL_5J7L_063
NA
IL_8GHU_0321/a/1440:1442,
1/a/1460:1461		Single bulged A
homologous
IL_5J7L_064
NA
IL_8GHU_0331/a/1445:1448,
1/a/1455:1457		No text annotation
homologous
IL_5J7L_065
NA

Problematic loops

#loop idProblemSequence
IL_8GHU_034Isolated non-canonical cWW pair
IL_8GHU_036No text annotation
IL_8GHU_037No text annotation
IL_8GHU_011No text annotation
IL_8GHU_012No text annotation
IL_8GHU_038No text annotation
IL_8GHU_039No text annotation
IL_8GHU_040No text annotation
IL_8GHU_041No text annotation
IL_8GHU_020tSH-tHW-tHS with extra cWW pairs
IL_8GHU_042No text annotation
IL_8GHU_025Other IL
IL_8GHU_044No text annotation
IL_8GHU_028Isolated non-canonical cWW pair
IL_8GHU_029No text annotation
IL_8GHU_046No text annotation
IL_8GHU_056No text annotation
IL_8GHU_030No text annotation
IL_8GHU_047No text annotation
IL_8GHU_048No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8GHU_0011/a/46:52,
1/a/359:369,
1/a/392:395		No text annotation
J3_8GHU_0081/a/142:144,
1/a/178:198,
1/a/219:221		No text annotation
J3_8GHU_0091/a/586:598,
1/a/640:666,
1/a/740:755		No text annotation
J3_8GHU_0021/a/826:829,
1/a/857:861,
1/a/868:874		No text annotation
homologous
J3_5J7L_004
NA
J3_8GHU_0101/a/1073:1074,
1/a/1083:1087,
1/a/1098:1102		No text annotation
homologous
J3_5J7L_009
NA
J4_8GHU_0031/a/115:123,
1/a/238:240,
1/a/286:289,
1/a/311:312		No text annotation
J4_8GHU_0041/a/930:1010,
1/a/1019:1068,
1/a/1107:1113,
1/a/1187:1387		No text annotation
J5_8GHU_0011/a/36:39,
1/a/403:406,
1/a/436:443,
1/a/491:500,
1/a/545:548		No text annotation
J5_8GHU_0031/a/58:66,
1/a/103:113,
1/a/314:316,
1/a/337:340,
1/a/349:354		No text annotation
J6_8GHU_0011/a/817:821,
1/a/879:885,
1/a/912:921,
1/a/1396:1414,
1/a/1486:1507,
1/a/1528:1529		No text annotation

Problematic loops

#loop idProblemSequence
J3_8GHU_004No text annotation
J3_8GHU_005No text annotation
J3_8GHU_006No text annotation
J3_8GHU_007No text annotation
J3_8GHU_003No text annotation
J4_8GHU_001No text annotation
J4_8GHU_002No text annotation
J5_8GHU_002No text annotation

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